Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20830 294 / 2e-99 transferases;folic acid binding (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G104700 [exp] 575 / 0 AT2G20830 288 / 5e-97 transferases;folic acid binding (.1.2.3) Potri.013G145700 [exp] 331 / 1e-113 AT2G20830 384 / 7e-135 transferases;folic acid binding (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018559 [exp] 447 / 4e-159 AT2G20830 288 / 6e-97 transferases;folic acid binding (.1.2.3) Lus10039790 [exp] 437 / 2e-155 AT2G20830 285 / 6e-96 transferases;folic acid binding (.1.2.3) Lus10039789 [exp] 311 / 5e-106 AT2G20830 344 / 2e-119 transferases;folic acid binding (.1.2.3) Lus10018558 [exp] 291 / 1e-97 AT2G20830 354 / 3e-123 transferases;folic acid binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07837 [poplar] [flax] FTCD_N Formiminotransferase domain, N-terminal subdomain
Representative CDS sequence Show only first row Show all	>Potri.013G145600.1 pacid=42811360 polypeptide=Potri.013G145600.1.p locus=Potri.013G145600 ID=Potri.013G145600.1.v4.1 annot-version=v4.1 ATGGATTTTGACTCGAGTTGCAAGAACAAAAAAACTGCAAATGAATCCATGCTGATATGCTGCATGCTCTTCATCTCTGAAGCACGTAACCGTGCAGCTC TGGACTTAATTGAACGATCTGCTAGGATCGACCCAGAAAGTGTCATTGTAAACAAATTTGAGGACCGAGTTTATAATAGGATCAGGTTCACTATTGTATC ATATGTTGTTGTTGATAGCACTGGTAGTCCCATTTATAGTCCATTGCACCAAACAGTGCTAGCCATTGTTGAGGCTGCTTATGGAGCCATTAACCTAGAG TTGCACTCTGGCGCACACCCTCGACTTGGCGTTGTAGATGATATTGCTTTCCACCCTTTGGCTGAAGCATCACTGGATGAAGCAGCCTGGCTTGCTAAGG CTGTGGCAGCAGATATTGGCAGCAGATTTCAAGTGCCGGTATTTCTTTATGCTGCAGCACACCCAACAGGCAGGGCCCCGGACACAATCAGGCGTGAGCT AGGCTACTACAGGCCAAATTTCATGGGCAGCCAATGGGCAGGGTGGAACATACCCGAAATTCTCCCAGAAAATCCTGACCATGGTCCAAACCATGTGTCT CGGACCAGAGGAGTCACGCTGATAGGGGCACGGTCATGGGTCACATTATACAACATTCCCATCATGTGCACCGATGTTTCAACTGCTCGACGGATAGCAC GCATGGTAAGTGCTCGCGGTGGTGGGCTCCCAACAGTACAATCTTTGGCCCTATTTCATGGCGATGATTCAGCTGAGATTGCTTGCATGCTCTTGGAGCC TAATCGGATTGGCCCAGACAGGGTGCAAGCACAGGTTGAGATGTTGGCAGCTCAAGAAGGGTTGGATGTAGAGAAGGGCTATTTCACTGATCTTTCACCA GAAATGATTGTGCAAAAGTACATGAATTTAATCTCTGCTAGGAGAGACTGA
AA sequence Show only first row Show all	>Potri.013G145600.1 pacid=42811360 polypeptide=Potri.013G145600.1.p locus=Potri.013G145600 ID=Potri.013G145600.1.v4.1 annot-version=v4.1 MDFDSSCKNKKTANESMLICCMLFISEARNRAALDLIERSARIDPESVIVNKFEDRVYNRIRFTIVSYVVVDSTGSPIYSPLHQTVLAIVEAAYGAINLE LHSGAHPRLGVVDDIAFHPLAEASLDEAAWLAKAVAADIGSRFQVPVFLYAAAHPTGRAPDTIRRELGYYRPNFMGSQWAGWNIPEILPENPDHGPNHVS RTRGVTLIGARSWVTLYNIPIMCTDVSTARRIARMVSARGGGLPTVQSLALFHGDDSAEIACMLLEPNRIGPDRVQAQVEMLAAQEGLDVEKGYFTDLSP EMIVQKYMNLISARRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20830			transferases;folic acid bindin...		Potri.013G145600 [exp]	0	1
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Potri.018G132000 [exp]	1.41	0.8262
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.003G112800 [exp]	2.23	0.8292
AT2G02400			NAD(P)-binding Rossmann-fold s...		Potri.004G230900 [exp]	6.48	0.7784
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	10.19	0.7678
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.001G154300 [exp]	11.13	0.7108
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060200 [exp]	14.73	0.7372
AT3G14205			Phosphoinositide phosphatase f...		Potri.001G163900 [exp]	14.83	0.7715
AT4G33580		ATBCA5	A. THALIANA BETA CARBONIC ANHY...		Potri.005G156600 [exp]	15.49	0.7822
AT2G15830			unknown protein		Potri.009G107050 [exp]	17.02	0.7717
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Potri.015G099000 [exp]	22.18	0.7241

Compare expression of checked genes

Potri.013G145600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.