Plant FIBer expression Database

Potri.013G145800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20830 137 / 2e-39 transferases;folic acid binding (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039788
[exp]
221 / 9e-76 AT2G20830 132 / 2e-37 transferases;folic acid binding (.1.2.3)
Lus10018557
[exp]
221 / 3e-75 AT2G20830 125 / 4e-35 transferases;folic acid binding (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0255 ATP_synthase PF09811 Yae1_N Essential protein Yae1, N terminal
Representative CDS sequence
>Potri.013G145800.1 pacid=42811400 polypeptide=Potri.013G145800.1.p locus=Potri.013G145800 ID=Potri.013G145800.1.v4.1 annot-version=v4.1
ATGAATTCTCAATCTCAATTAAGCTCCATTGAAGACATCTTCGATTCCTCACTAAATTTAGAGGAAACCCATTTCAAGGAAGGCTACAATGAAGGCTACA
GCCAAGGGTTAATGTCTGGAAAAGAAGAAGCGGAACAAACGGGCCTGAAAATGGGCTTTGAAATCGGTGAAGAACTCGGGTTTTATCGTGGCTGTGTTGA
TGTATGGAATTCTGCTATTCTTGTTGACCCGACCCGGTTCTCTACCCGGTTGAAGGAGTCTATTAAGAAGATGGAGGAGTTGATTGAGAAATACCCGGTT
TTGGACCCGGAAGATGAGAGAGTGAATGAGTTTATGGATAGTTTGAGGTTGAAGTTTCGGGTCATAAGGGCGGGTTTGGGTGTGAAATTGGAGTATGATG
GGTACCCAAAACCAAAGGAAATCGAGTTTTGA
AA sequence
>Potri.013G145800.1 pacid=42811400 polypeptide=Potri.013G145800.1.p locus=Potri.013G145800 ID=Potri.013G145800.1.v4.1 annot-version=v4.1
MNSQSQLSSIEDIFDSSLNLEETHFKEGYNEGYSQGLMSGKEEAEQTGLKMGFEIGEELGFYRGCVDVWNSAILVDPTRFSTRLKESIKKMEELIEKYPV
LDPEDERVNEFMDSLRLKFRVIRAGLGVKLEYDGYPKPKEIEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20830 transferases;folic acid bindin... Potri.013G145800
[exp]
0 1
AT4G34740 CIA1, ATASE2, A... CHLOROPLAST IMPORT APPARATUS 1... Potri.004G164000
[exp]
7.61 0.9206
AT3G61320 Bestrophin-like protein (.1) Potri.014G082900
[exp]
11.13 0.9246
AT1G19140 unknown protein Potri.006G139800
[exp]
15.68 0.8707
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Potri.006G100500
[exp]
22.58 0.9044 Pt-PDX1.1
AT2G13360 SGAT, AGT1, AGT L-serine:glyoxylate aminotrans... Potri.001G253300
[exp]
27.42 0.9168 Pt-AGT.2
AT2G33450 Ribosomal L28 family (.1) Potri.010G068500
[exp]
29.64 0.9192
AT1G07010 AtSLP1 Shewenella-like protein phosph... Potri.009G077900
[exp]
30.88 0.9107
AT3G27750 EMB3123 EMBRYO DEFECTIVE 3123, unknown... Potri.003G051400
[exp]
35.63 0.9160
AT1G15550 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS TH... Potri.001G176600
[exp]
37.13 0.8563 GA3ox1,Pt-LE.1
AT1G49620 ICN6, ICK5, KRP... KIP-RELATED PROTEIN 7, Cyclin-... Potri.009G103600
[exp]
39.94 0.9080 Pt-ICK5.1,7

Potri.013G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.