Plant FIBer expression Database

Potri.013G145900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G109200
[exp]
640 / 0 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039787
[exp]
160 / 2e-43 ND /
Lus10018556
[exp]
156 / 3e-42 ND /
PFAM info
Representative CDS sequence
>Potri.013G145900.1 pacid=42811002 polypeptide=Potri.013G145900.1.p locus=Potri.013G145900 ID=Potri.013G145900.1.v4.1 annot-version=v4.1
ATGGCTATGGGGGGTTCCCACAAAGGAAACGGCAATGGAAATAGAGGGAAGCCATATGGGTTGATGTTGCTTTTAGCATTTGGGGCTGCTTTGCTTGGCG
TTATGGTGCTACACAAGCTCAGAGAGAGGCGCATCTTCAACCTCCTTGTCGAAGAGAAGGGCCAAGAGCTCATTTCCCTTCAGCTTCTCTTGCAGAAGGA
AGGACAACGCAGCAGAGAAATGAAGAGGAAGACCGAAGAGATGAAAGCAAAGATTTACTCTCTAAGAATCCAAAAGATGGAGCTCGACAGGCGGCTTCTG
GAGATGCAGTCTACGATTGGTTCTATGAAGGATGAACAAAAGATTATGGAGTCTGCACTCGAGGAGAAGCAAAGTGAGATCAAAATGCTAAGAGAGACGA
ACAAAGGTGCGGAGAAAGAAACTCTTCAAATGGAAGTACTTAGAGAAAGTCTGAAACAAAAGGAAGCTGAAATTGAGGATTTGAAGCACCGTCTTGAATA
CCCAGCTAAGATATGGTCGGTCAGCACAGATGACCCATCGAGCCCATCTGTAAACAGGACTGTGACCTTGAATATGATAAGCGAGAATAAGATAGAGGCT
GGAAAGAGTGAAGAAGAGGTTCTGTTGCAAGAATCTGCAAATGATAGTAATGGTTTGAATTCAACAAAGGGTAACGGAGGCAACACTACATCCATCAATC
AAGAACAGGTGGGTGATACTGCCACAGTTGAAAATGCAAGTGAAAGCAAGGTAGCAATTCCTGACAGGACAGAAGAGCCCAGAGAAGAGCAGTTGCAGAT
GCTTGAAGGCTCCAGAAATGGAAGAGCCATTGGAATTACTAATGATCAAGTGAACAAAAGTGAAAGTTCTCAAGAGAAGGGCACTTCTGGTTCGGGAGAG
GAAAATAATGCTTCAAATGCAACTGAGACGAACGTGAGCAGGATTGGAAGAGTATCAAAAATTACAGATGCAGATAATGAAGAGAAATCAAAGGATGGTG
AAGAGCATAAAGTCACCCGAGATGGGAAGCTGGAACTCGAAAATGTTCTGGAGGCAGAAGGTCATCAAGAAACTTTTAGGGGTGGTGTGAAGTTGAAAAT
GATGGACAACTCCAGAAATACGAGGAGGGAGAAATACCGCCATGCTAGCAGAGTAAGAGGAAAGAGAGGGGAAATGGGTACCAGGAATAGGCTGCTGGAG
ATTAGAAATCATGAAAACAATGGGGCTGAGAAGATGAGAAGTAGGAAGTCTCCTACTGATGATCAAGGAAGACTGATGGACAGAGAAGAGGGAAGAGCGT
CCAATGATGGAAAAACAGAAGAAATAAGAAAGGCAGTGGATTCTTCTGATGGCAAAACAATGGAGCATCAAAACCATGAAGACTCTAAAGATCTGCAAAA
CAAACTGGGGAAAGATGGTACAAATCACCAGATGAGTGAAGACCATGAGACATTGAAAAGGCTCCGGATAGCTCATGACAGCAAAGAGCTGACAAATGGA
AGCCTTGATGGCCAGCCTGGTAACATCAGAAGCAATGACAGGAAAGAGAGCCTGGATAAAGGCCAACAACATGAAGATCGACAACAAGCCAGTGGCACGC
AAGAAAGCAGAAACAGCAGCATTATGAACAACAAAGAAAACAGTAATGAACAAGTGAAACTAATCAGAAAGCATGAAAAGCAAGAACAAACAGAGGATTC
AGATACAGAACAGGAGACAGATGGAGGAGCTGGATATTTTTACAAGGACTCATTTTCTGATTTTGAAGAAGATAAAGAAGAGTACAGAGAGGAAACGGAC
GAGTCCGAGTTCTAG
AA sequence
>Potri.013G145900.1 pacid=42811002 polypeptide=Potri.013G145900.1.p locus=Potri.013G145900 ID=Potri.013G145900.1.v4.1 annot-version=v4.1
MAMGGSHKGNGNGNRGKPYGLMLLLAFGAALLGVMVLHKLRERRIFNLLVEEKGQELISLQLLLQKEGQRSREMKRKTEEMKAKIYSLRIQKMELDRRLL
EMQSTIGSMKDEQKIMESALEEKQSEIKMLRETNKGAEKETLQMEVLRESLKQKEAEIEDLKHRLEYPAKIWSVSTDDPSSPSVNRTVTLNMISENKIEA
GKSEEEVLLQESANDSNGLNSTKGNGGNTTSINQEQVGDTATVENASESKVAIPDRTEEPREEQLQMLEGSRNGRAIGITNDQVNKSESSQEKGTSGSGE
ENNASNATETNVSRIGRVSKITDADNEEKSKDGEEHKVTRDGKLELENVLEAEGHQETFRGGVKLKMMDNSRNTRREKYRHASRVRGKRGEMGTRNRLLE
IRNHENNGAEKMRSRKSPTDDQGRLMDREEGRASNDGKTEEIRKAVDSSDGKTMEHQNHEDSKDLQNKLGKDGTNHQMSEDHETLKRLRIAHDSKELTNG
SLDGQPGNIRSNDRKESLDKGQQHEDRQQASGTQESRNSSIMNNKENSNEQVKLIRKHEKQEQTEDSDTEQETDGGAGYFYKDSFSDFEEDKEEYREETD
ESEF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G145900
[exp]
0 1
AT1G64405 unknown protein Potri.003G140100
[exp]
1.73 0.9580
AT2G45430 AT-hook AHL22 AT-hook motif nuclear-localize... Potri.002G149300
[exp]
6.48 0.9579
AT4G08250 GRAS GRAS family transcription fact... Potri.005G175300
[exp]
10.58 0.9489
AT5G06490 RING/U-box superfamily protein... Potri.010G243200
[exp]
10.90 0.9413
AT2G44340 VQ motif-containing protein (.... Potri.001G230800
[exp]
11.31 0.9408
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.004G191400
[exp]
18.02 0.9415
AT5G17450 HIPP21 heavy metal associated isopren... Potri.017G123400
[exp]
18.43 0.9299
AT5G61430 NAC ANAC100, ATNAC5 NAC domain containing protein ... Potri.015G020000
[exp]
20.97 0.9360 NAC021
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.001G134300
[exp]
22.91 0.9331
AT1G14920 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMON... Potri.016G027800
[exp]
23.10 0.9414

Potri.013G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.