Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20815 218 / 1e-63 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G30710 85 / 6e-17 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 84 / 1e-16 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 78 / 5e-15 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 77 / 1e-14 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 76 / 3e-14 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT3G60000 65 / 9e-11 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G44190 58 / 2e-08 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT2G20616 54 / 4e-08 Family of unknown function (DUF566) (.1) AT5G43160 47 / 2e-05 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103800 [exp] 93 / 1e-19 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.006G181700 [exp] 90 / 1e-18 AT4G30710 274 / 2e-83 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G126000 [exp] 75 / 4e-14 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.009G089800 [exp] 75 / 7e-14 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.001G295800 [exp] 75 / 8e-14 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 73 / 4e-13 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 58 / 1e-08 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.006G000400 [exp] 56 / 4e-08 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018555 [exp] 294 / 2e-91 AT2G20815 222 / 1e-65 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10039786 [exp] 284 / 1e-87 AT2G20815 218 / 3e-64 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10033792 [exp] 92 / 4e-19 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10014636 [exp] 91 / 5e-19 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10022176 [exp] 90 / 2e-18 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10038729 [exp] 81 / 7e-16 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10010780 [exp] 78 / 1e-14 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 78 / 1e-14 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10039129 [exp] 73 / 3e-13 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 72 / 6e-13 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [poplar] [flax] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Potri.013G146100.3 pacid=42810916 polypeptide=Potri.013G146100.3.p locus=Potri.013G146100 ID=Potri.013G146100.3.v4.1 annot-version=v4.1 ATGTTTGTTTCTCCTCTCATCCATTTTGAAGACAAAACCAACATCCCTCAAATCTCTCTATTGTTAGAATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCTCTCTCGTTCTCTCTCGCGCACACAAAGAAACAATGAAGAATACTGAAAATGAACCGTTTCTGCTCTCATCAGATCAATCTCTCAAACCAAG AAGACCCAAGTCTCGGGAAGTAAGCTCCAGGTTTCTCTCGCCAACCTCACCTTCACATAACAATGGAACCCCATCTCCAAACCAAGGTTCCTCATCACCA CGTCGCCCTAAACCCTCCTCTGATGGTCGAAAGCATCGGAGCCTTGATGATCCTGGATTCATTCGAGGCCTTTGGCCTTCTTCGTCGCCTTCACAATCAT CAAACAACCAAAACAATCAAGGCACTCTAGCAGATCATCTTGGAAATGCAAGATTGAAAGATTTGTTAGACCACAAGAAAGATGAAAAACCCACGAAGAG TAGCAGTGTGTTTTCACTTGGTAGGCAAAGGAGTACTGGTACTGTGTTTGGTAGGGTTGAAAATGATAAAGAGAAAGAGAGCACAAAAGAAAATCATAGA CCAATTCTTGGAGGATCTGCGAGATACACAGGGAAATTTCACTTTCCGGGAAAATCTTCTTCTTCATCGTCATCATCCTCCTCGAATTCATCGTCTAATA ACAATCATGTTTATGTTCCTGGAAGATTATCTGTTGATGAAAATGCCCTTTATAAAAATTCGAAAGAAGTTGGTGCATCTCGGAGAAATTCGGATATATT TGAGGATAATCTCGAGTCAGAAATATCCGAGTGTAGTGATAAACATTCAGGAAATGATCTTTTTTCTCCAACTTTAGGAAGAAGTTCTAGGAAATCTGGT GTAGAGGTCTCTTCTAAATATATGAATGATATACCAACAAGGCCACGGAGATGGACAACGGATGCTAATGCTCAAACTGCAGTATCATTAGAGTCTTCTC CAAAAATGAAGAAACTTACAATGAAGAATGTGATTAAGAGAGCTAATTCACTTACGGGGTATGGGAGTGCCACATCCCAGTGGGCCTTGTCACCAGGGCG ATCAGGGTCACCGCCGATGTCAGTGGAAAGCAAGGAAAAGCTGATGTCCTTTTCAAATTTGAAACCGCCATCAAATCCGTCGAGGACTAAAGGTGTTGAG AAATTGCTGAATATGGGTCTGGACTTGTTTAAGGGTAAGAAATCTCTGTCATCTAGTTCATTGCTCTCAGGATCTGGGAATGTTGAGAACATTCATCAGC TAAGAATGCTTCATAATCGGCTGATGCAATGGCGGTATGCAAATGTTAGAGCTGCTACTGTGAACTTGAACATAAATAAGCAAGTGGAGAACAATCTGTT ATGGGTGCTGGATAGTCTTTCAAAGCTTCGACTTTCTGTCGCACAAAGGAGATTAAAGCTTCAGAAGGAAAAGCTCAAGATGAAGCTAGACTTTGTACTT CACTCTCAAATCAAATTGTTGGAAGCTTGGGGAGACATGGAAAGGCAGCACTTATCTTCAGTTTCAAAGACTAAAGAGTGTTTACATTCTGTTGTTTGCA GAGTTCCCCTCATTGAAGGTGCAGAGGTTGATCCACAATCAGCTTCCATCGCACTACGACATGCATCAGATCTCTCAGCGTCCATCAAGTCAGCATTATC TTCATTTTCACCCTCAGCTGAGCAGACTGTTGCACTTCTCTCACAATTAGCAGAGGTGGTTGCACAAGAGAAACTACTCGTGGAAGAATGCCTAGAACTT CTTCAGACAGTATCTGCACTACAGATACAAGAGAAAAGTTTGAAGTGCTATATAATCCAGTTTAATTCGAAGCAACAACAACCGCAGCAGCAAGAACAAC AATCACAGCTACAAGAAACCCCTTCTTAG
AA sequence Show only first row Show all	>Potri.013G146100.3 pacid=42810916 polypeptide=Potri.013G146100.3.p locus=Potri.013G146100 ID=Potri.013G146100.3.v4.1 annot-version=v4.1 MFVSPLIHFEDKTNIPQISLLLESSLSLSLSLSLSLSLVLSRAHKETMKNTENEPFLLSSDQSLKPRRPKSREVSSRFLSPTSPSHNNGTPSPNQGSSSP RRPKPSSDGRKHRSLDDPGFIRGLWPSSSPSQSSNNQNNQGTLADHLGNARLKDLLDHKKDEKPTKSSSVFSLGRQRSTGTVFGRVENDKEKESTKENHR PILGGSARYTGKFHFPGKSSSSSSSSSSNSSSNNNHVYVPGRLSVDENALYKNSKEVGASRRNSDIFEDNLESEISECSDKHSGNDLFSPTLGRSSRKSG VEVSSKYMNDIPTRPRRWTTDANAQTAVSLESSPKMKKLTMKNVIKRANSLTGYGSATSQWALSPGRSGSPPMSVESKEKLMSFSNLKPPSNPSRTKGVE KLLNMGLDLFKGKKSLSSSSLLSGSGNVENIHQLRMLHNRLMQWRYANVRAATVNLNINKQVENNLLWVLDSLSKLRLSVAQRRLKLQKEKLKMKLDFVL HSQIKLLEAWGDMERQHLSSVSKTKECLHSVVCRVPLIEGAEVDPQSASIALRHASDLSASIKSALSSFSPSAEQTVALLSQLAEVVAQEKLLVEECLEL LQTVSALQIQEKSLKCYIIQFNSKQQQPQQQEQQSQLQETPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20815		QWRF3	QWRF domain containing 3, Fami...		Potri.013G146100 [exp]	0	1
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.005G066801 [exp]	16.79	0.7579
AT5G44360			FAD-binding Berberine family p...		Potri.011G161800 [exp]	20.19	0.7145
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.015G091800 [exp]	23.17	0.7480
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	26.15	0.6806
AT3G04880		DRT102	DNA-DAMAGE-REPAIR/TOLERATION 2...		Potri.005G050600 [exp]	40.91	0.7079	Pt-DRT102.2
					Potri.008G221102 [exp]	43.47	0.5948
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Potri.018G110600 [exp]	52.96	0.6852
					Potri.014G189201 [exp]	66.96	0.6218
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	68.37	0.6739	Pt-ATRLI1.1
					Potri.005G051850 [exp]	74.69	0.6794

Compare expression of checked genes

Potri.013G146100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.