Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20810 821 / 0 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT1G18580 578 / 0 GAUT11 galacturonosyltransferase 11 (.1) AT5G47780 491 / 1e-168 GAUT4 galacturonosyltransferase 4 (.1) AT3G61130 484 / 4e-165 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT4G38270 463 / 5e-157 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G25140 432 / 1e-146 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 400 / 9e-134 GAUT9 galacturonosyltransferase 9 (.1) AT2G46480 372 / 3e-123 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 348 / 7e-114 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 341 / 3e-111 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G108900 [exp] 958 / 0 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1) Potri.015G060800 [exp] 591 / 0 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1) Potri.012G064500 [exp] 556 / 0 AT1G18580 846 / 0.0 galacturonosyltransferase 11 (.1) Potri.016G001700 [exp] 487 / 2e-166 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.004G206000 [exp] 474 / 6e-161 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.014G073800 [exp] 471 / 9e-160 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 470 / 1e-159 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.006G001100 [exp] 461 / 2e-157 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.002G246500 [exp] 432 / 2e-146 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018554 [exp] 909 / 0 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10007979 [exp] 588 / 0 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1) Lus10013506 [exp] 585 / 0 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10041389 [exp] 480 / 5e-164 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 479 / 2e-163 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 476 / 5e-162 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 479 / 1e-161 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10039784 [exp] 459 / 2e-160 AT2G20810 459 / 1e-160 galacturonosyltransferase 10 (.1) Lus10026546 [exp] 483 / 1e-159 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10011834 [exp] 433 / 2e-146 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.013G146200.1 pacid=42811952 polypeptide=Potri.013G146200.1.p locus=Potri.013G146200 ID=Potri.013G146200.1.v4.1 annot-version=v4.1 ATGAGACGGAGACCAGTGGACTTTAGGAGGCCAGTAAGGAGGAGGGTATCAAATGTGGTGGTGTGGTCATTGTGTGGTACAGTTGTGTTGCTGTTTATAG TTATTTTTAGCAAAGAGAGTCGTATTGAATCAAGACCCACAAGCTCTATTAAGGACTTTACCAAGTATGTGAAAAACATTGAAGGTCTAAACATTACGGA TGAAATGTTGAGCCCCACCTCAGTCACCAGGCAACTTAGCGACCAAATTTCTCTTGCAAAAGCTTTTGTTGTGATCGCCAAAGAAAGTAACAATATTCAG TTTGCTTGGGAATTAAGTGCCCAAATACGCAATTCCCAGGTCCTCCTTTCAAGTGTTGCAACAAGGCGAGCTCCTTTAACAACCAGAGAATCAGAAACTG CAATCCGTGATATGGCACTTTTGCTCCTCCACGCCCAGCAACTTCATTATGATAGCGCAACTATGATCATGAGACTGAAAACCAAAATCCAAACTCTTGA TGAACAAATGGGTGCAGTGAGTGAGAAAAGCTCGAAGTATGGTCAAATAGCTGCTGAAGAAATCCCAAAAGGACTTTACTGCCTTGGTATTCGGTTAACT ACTGAATGGTTTGGAAATTCAAATCTACACAGAAGAATGAATGAGAGAATGCACATTGAGACAAAACTTAGAGATAACAGTCTCTATCATTTCTGTGTCT TCTCTGACAATATCCTTGCAACATCTGTTGTTGTCAATTCAACTACGTTAAATTCCAAGAATCCAGATATGGTTGTGTTTCATCTTGTAACTGATGAAAT AAACTATGCTGCTATGAAGGCTTGGTTTTCTATGAACACTTTCCGAGGAGTTACCATTGAGGTTCAGAAGTTTGAAGACTTTAAATGGCTAAATGCTTCG TATGTTCCAGTGCTTAAGCAGCTCCAGGACTCTGAAACTCAAAGCTATTACTTTTCAGGCCATAATAATGATGGCCAAACTCCTATCAAGTTCCGGAACC CAAAATATCTATCCATGCTTAATCACCTCAGATTTTATATTCCTGAAGTTTTTCCTGCACTGGAGAAGGTGGTATTTCTTGATGATGATGTAGTTGTTCA GAAGGATCTATCTGGTCTATTTTCAATTGATTTGAACAGCAATGTTAATGGAGCAGTTGAGACATGCATGGAGACATTTCACAGATACCATAAGTACCTG AACTACTCTCACCCTCTCATTAGAGAACATTTTGATCCTGATGCATGTGGTTGGGCGTTTGGAATGAACGTTTTCGATTTGGTTGAGTGGAGAAAGCGAA ATGTAACTGAAATCTACCACTACTGGCAAGAAAAGAATGTGGATCGGACACTATGGAAACTTGGGACGCTACCGCCTGGACTTTTGACTTTCTATGGGTT GACAGAGCCTTTAGATCCCTCATGGCATGTGTTGGGATTGGGCTATACAAATGTTGATCCTCACTTGATAGAGAAAGGGGCTGTGTTGCACTTCAATGGA AACTCCAAGCCATGGTTGAAAATTGGGATGGAAAAATACAAGTCTCTCTGGGAAAAGTACGTAGACTATAGTCATCCTTTATTACAACAGTGCAATTTTC ATTGA
AA sequence Show only first row Show all	>Potri.013G146200.1 pacid=42811952 polypeptide=Potri.013G146200.1.p locus=Potri.013G146200 ID=Potri.013G146200.1.v4.1 annot-version=v4.1 MRRRPVDFRRPVRRRVSNVVVWSLCGTVVLLFIVIFSKESRIESRPTSSIKDFTKYVKNIEGLNITDEMLSPTSVTRQLSDQISLAKAFVVIAKESNNIQ FAWELSAQIRNSQVLLSSVATRRAPLTTRESETAIRDMALLLLHAQQLHYDSATMIMRLKTKIQTLDEQMGAVSEKSSKYGQIAAEEIPKGLYCLGIRLT TEWFGNSNLHRRMNERMHIETKLRDNSLYHFCVFSDNILATSVVVNSTTLNSKNPDMVVFHLVTDEINYAAMKAWFSMNTFRGVTIEVQKFEDFKWLNAS YVPVLKQLQDSETQSYYFSGHNNDGQTPIKFRNPKYLSMLNHLRFYIPEVFPALEKVVFLDDDVVVQKDLSGLFSIDLNSNVNGAVETCMETFHRYHKYL NYSHPLIREHFDPDACGWAFGMNVFDLVEWRKRNVTEIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGLGYTNVDPHLIEKGAVLHFNG NSKPWLKIGMEKYKSLWEKYVDYSHPLLQQCNFH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Potri.013G146200 [exp]	0	1
AT3G21300			RNA methyltransferase family p...		Potri.001G195300 [exp]	36.33	0.8311
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.008G147200 [exp]	42.63	0.7845
AT3G01750			Ankyrin repeat family protein ...		Potri.008G179100 [exp]	113.48	0.7993
AT4G25550			Cleavage/polyadenylation speci...		Potri.015G143300 [exp]	146.35	0.7868
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Potri.007G071400 [exp]	194.79	0.7843
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Potri.014G137400 [exp]	262.00	0.7794

Compare expression of checked genes

Potri.013G146200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.