Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31980 235 / 2e-70 unknown protein AT3G50150 204 / 2e-60 Plant protein of unknown function (DUF247) (.1) AT2G36430 199 / 9e-59 Plant protein of unknown function (DUF247) (.1) AT3G50120 196 / 7e-57 Plant protein of unknown function (DUF247) (.1) AT3G50170 196 / 7e-57 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50160 191 / 2e-55 Plant protein of unknown function (DUF247) (.1) AT3G50180 190 / 2e-54 Plant protein of unknown function (DUF247) (.1) AT3G50140 184 / 1e-52 Plant protein of unknown function (DUF247) (.1) AT3G50130 183 / 5e-52 Plant protein of unknown function (DUF247) (.1) AT5G22540 180 / 9e-52 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146300 [exp] 718 / 0 AT4G31980 217 / 1e-63 unknown protein Potri.013G146400 [exp] 461 / 3e-160 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146700 [exp] 457 / 2e-159 AT3G50150 233 / 2e-71 Plant protein of unknown function (DUF247) (.1) Potri.019G108400 [exp] 353 / 1e-118 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.017G145100 [exp] 298 / 6e-97 AT4G31980 225 / 1e-66 unknown protein Potri.003G181600 [exp] 234 / 8e-73 AT2G36430 241 / 5e-75 Plant protein of unknown function (DUF247) (.1) Potri.003G181800 [exp] 234 / 2e-72 AT2G36430 238 / 1e-73 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 233 / 6e-72 AT4G31980 317 / 1e-101 unknown protein Potri.010G144200 [exp] 229 / 1e-70 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 367 / 4e-124 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 363 / 6e-123 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 323 / 2e-106 AT4G31980 251 / 5e-76 unknown protein Lus10038339 [exp] 315 / 3e-103 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 313 / 8e-103 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 310 / 2e-101 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 299 / 3e-97 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 226 / 1e-68 AT4G31980 180 / 2e-49 unknown protein Lus10037762 [exp] 210 / 5e-63 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10009871 [exp] 208 / 2e-62 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.013G146600.1 pacid=42811595 polypeptide=Potri.013G146600.1.p locus=Potri.013G146600 ID=Potri.013G146600.1.v4.1 annot-version=v4.1 ATGGCTAATCCAGTTGCAGCTGAGGATGGTCCACGCCGCGAATATCCATGGCTGGATGGAATCAAGCAAGACATTGCAGATTTGTCTCCGGTATCAAATT GGAGCATTTGGAAGGTTCCAAATAGCCTTCGGACTGTGAATGATGATGCCTACAATCCTCACATCATCTCAATCGGACCTCTTCACAGAAGAGAGGAAAA ATTGCAATCCATGGAGGTTCACAAATTGTATTATATGCGATCCCTCCTACTACGAACACCAGATGTAGATGAGACTCTCAGATCTTCTGCTGAGGCCATC GAAGATTTCGGGAAAATGGTCCGTGCTTGCTATGCAGAACCAATCCATACGCGTGTAAGTACGCTTGCTGAAATTTTGTTAGTCGATGGTTGCTTTATGC TTGAACTTTTTATAAGATACTCCAAAGTTGATCTTAGAGTGCAAGATGATCCCTTGTTTTACTCCCCGTGGATTATCTTAACTCTCCAGCGAGACCTTGC ATTGCTTGAGAATCAGATTCCATTCTTTGTTCTGGAAAGACTGTACTCGCAAGTAGTGGAGTCTAGTACTATTGGTCAGTCATTGCCTAGCCTCCCTGAG CTCGCTCTTGGTTTCTTCAAATCAGTTCTATACATTAATGATGAGAATCTTAGGATCATTAGGAGACCCTATCCCCATGTGCTTGACTTAATTCACAAGT GCTGCTCACCCCAGCCATCCTCTGGAAGTAGCAATATTGGAGAATGGGTTTCAACGCAGCCAGCAACATCACTCAACGAGGCTGGAATTGTGTTTAGGAA AGGTACAACAAGAACTCTATTTGACTTGACGTTCAGAAACGGTGCACTCGAAATCCCACCATTGCTCATCCATGATTCAACAGTCTCACTCTTCCAAAAT CTCATTGCTTACGAGCAACTTTCACGCTGTACTGAAAAATACTTCACATCTTATTTCGCACTAATGTCCCGTCTTGTTTATGATCGGAGAGATGCTGAAC TACTTGAGAGCAAAGGTATAATTCAAAACGATACGAGTGGTTGGAAAGATATTTCAGTGCTCTTCAATGATATGCGCAAGCAGGTTGCTGTGCAAGATTT CTATTATGCAAACCTATGTCAGAATTTGAACTCAAACTTCAGGACTCGTCCGGCTTTCTACAAGGCGACCTTGAGAAAGACCTATTTCAGAAGTCCATGG ACAACTGCATCGGTCATGGCTGCCTGCGTTCTTCTTTCTCTTGCTGTAATTCAAACGGTATACACAGTACTTTCGTATTATCCTCAAAATTGA
AA sequence Show only first row Show all	>Potri.013G146600.1 pacid=42811595 polypeptide=Potri.013G146600.1.p locus=Potri.013G146600 ID=Potri.013G146600.1.v4.1 annot-version=v4.1 MANPVAAEDGPRREYPWLDGIKQDIADLSPVSNWSIWKVPNSLRTVNDDAYNPHIISIGPLHRREEKLQSMEVHKLYYMRSLLLRTPDVDETLRSSAEAI EDFGKMVRACYAEPIHTRVSTLAEILLVDGCFMLELFIRYSKVDLRVQDDPLFYSPWIILTLQRDLALLENQIPFFVLERLYSQVVESSTIGQSLPSLPE LALGFFKSVLYINDENLRIIRRPYPHVLDLIHKCCSPQPSSGSSNIGEWVSTQPATSLNEAGIVFRKGTTRTLFDLTFRNGALEIPPLLIHDSTVSLFQN LIAYEQLSRCTEKYFTSYFALMSRLVYDRRDAELLESKGIIQNDTSGWKDISVLFNDMRKQVAVQDFYYANLCQNLNSNFRTRPAFYKATLRKTYFRSPW TTASVMAACVLLSLAVIQTVYTVLSYYPQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31980			unknown protein		Potri.013G146600 [exp]	0	1
AT3G05620			Plant invertase/pectin methyle...		Potri.013G013200 [exp]	1.73	0.9557
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	2.82	0.9497
					Potri.001G049700 [exp]	3.00	0.9269
					Potri.002G015500 [exp]	3.31	0.9212
AT3G50150			Plant protein of unknown funct...		Potri.013G146700 [exp]	4.47	0.9399
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.008G013900 [exp]	6.63	0.9399
AT5G50290			unknown protein		Potri.015G078700 [exp]	7.48	0.9320
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050200 [exp]	7.93	0.9458
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	9.48	0.9101
AT1G71140			MATE efflux family protein (.1...		Potri.004G093400 [exp]	11.53	0.9101

Compare expression of checked genes

Potri.013G146600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.