Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) AT4G31980 235 / 2e-70 unknown protein AT3G50120 222 / 9e-67 Plant protein of unknown function (DUF247) (.1) AT3G50160 219 / 4e-66 Plant protein of unknown function (DUF247) (.1) AT3G50170 218 / 3e-65 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G50140 214 / 7e-64 Plant protein of unknown function (DUF247) (.1) AT5G22540 206 / 2e-61 Plant protein of unknown function (DUF247) (.1) AT3G47250 202 / 9e-60 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT3G50180 202 / 7e-59 Plant protein of unknown function (DUF247) (.1) AT2G36430 197 / 3e-58 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G146400 [exp] 818 / 0 AT3G50150 238 / 3e-72 Plant protein of unknown function (DUF247) (.1) Potri.013G146300 [exp] 466 / 3e-163 AT4G31980 217 / 1e-63 unknown protein Potri.013G146600 [exp] 457 / 1e-159 AT4G31980 236 / 1e-70 unknown protein Potri.019G108400 [exp] 454 / 2e-158 AT3G50150 253 / 8e-79 Plant protein of unknown function (DUF247) (.1) Potri.017G145100 [exp] 337 / 3e-112 AT4G31980 225 / 1e-66 unknown protein Potri.004G187100 [exp] 264 / 8e-84 AT5G22540 418 / 7e-144 Plant protein of unknown function (DUF247) (.1) Potri.010G144200 [exp] 253 / 5e-80 AT3G50140 245 / 7e-76 Plant protein of unknown function (DUF247) (.1) Potri.018G029800 [exp] 250 / 7e-79 AT4G31980 317 / 1e-101 unknown protein Potri.005G116100 [exp] 239 / 2e-74 AT2G36430 511 / 4e-180 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039780 [exp] 515 / 0 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 466 / 5e-163 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 376 / 4e-127 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10038338 [exp] 373 / 4e-126 AT4G31980 251 / 5e-76 unknown protein Lus10010064 [exp] 363 / 2e-122 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 351 / 2e-117 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 348 / 2e-116 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 235 / 1e-72 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10024948 [exp] 233 / 4e-71 AT4G31980 180 / 2e-49 unknown protein Lus10027720 [exp] 227 / 4e-69 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.013G146700.4 pacid=42811683 polypeptide=Potri.013G146700.4.p locus=Potri.013G146700 ID=Potri.013G146700.4.v4.1 annot-version=v4.1 ATGGATCAACTTCACATCACAAATCAAGTTCCGGCCGAGAGAACATGGCTAGAATCCATCAAAATAGAGCTTGCTCATTTGAATCCACTATCAAATTGGA GTATTTGGAGGGTTCCAAACAACCTTCTGGCTGTGAATAAAGATGCATACAGTCCTCACATCATCTCCATCGGACCTCTTCACCATGGAGAGCAGAACGT GCTAGCTATGGAGGTTCACAAATTGCACTACATGCTGTCTCTCCTTGCTCGGACACCGGATCCTGCTAAGAGTCTAGATGAATGTGGCAAAGCCATCCTA CGTTTTGACAAGCACATCCGAGCTTGCTATGCCGAACCAATTGACAAATACAAAGAAAATGATCTTGTCAAAATGCTGTTGGTTGATGGTTGCTTTATAC TCGAGCTTTTCTTGAGGTTCTCCATGGCTGATCTGCGATTGCAAGATGATCCTGTTTTCAATACTTCTTGGATGGTTTTAACTCTTCGCCGCGACTTGGC ACTGCTAGAGAATCAGATTCCATTCTTTGCTCTTGAATGGCTGTTCAAGTTTACAGTAAAACCTAGTGCCATTGGTCAGTCACTACCTACCCTGCCTGAG CTAGCTTTCGATTTCTTTAAATCATCTCTGTATATCAATAGAGGAACTCTAGCTGTCAGCCGGAGAATAGTCCCCCATTTGCTTGGCCTAATACACAACT GCTACCTGCCCTTTTCTTCAAGACCAAATCCAAGAGGCAGGGGAGGATGGGAATTCATACACTATTCATCTGTACTCCTTCAGGCTGGAATCGAGTTCGA AAGGGACACAACGAGCAGTCTATTTGACTTGAAGTTTGAAAATGGTGTTTTCAAGATCCCACCATTACGCATCCATGATTCAACAGTTTCACTCTTCCAG AACCTCATTGCTTATGAGCAAAGATTCCATGGAGGTCAACAGTACATTACGTCTTACTTCTTGCTCATGGATCGTCTCATAGACACACCTAATGATGTTG AATTGCTTGTGCAAAGACGGATTATTGAGAATGATTTTGGTGGCTGGGAAGATATTTCAGCTTTTTTTAACAGTATCTGCAAGCAGATTGTTTTGCAGGA CTTTTACTATGCTGGGTTATGTGAGGATGTGAATGCATACTATAACAAACAATGTTATAGATACAAAGCAGACTTCAGAAGAGACCATTGCAAGAATCCA TGGGCAATCATATCACTAGTTGCTGGCTTTGTGCTTCTAGGTTTTACTGCATTACAAACTGTATATTCAGTACTAGCTTATTACAAATGA
AA sequence Show only first row Show all	>Potri.013G146700.4 pacid=42811683 polypeptide=Potri.013G146700.4.p locus=Potri.013G146700 ID=Potri.013G146700.4.v4.1 annot-version=v4.1 MDQLHITNQVPAERTWLESIKIELAHLNPLSNWSIWRVPNNLLAVNKDAYSPHIISIGPLHHGEQNVLAMEVHKLHYMLSLLARTPDPAKSLDECGKAIL RFDKHIRACYAEPIDKYKENDLVKMLLVDGCFILELFLRFSMADLRLQDDPVFNTSWMVLTLRRDLALLENQIPFFALEWLFKFTVKPSAIGQSLPTLPE LAFDFFKSSLYINRGTLAVSRRIVPHLLGLIHNCYLPFSSRPNPRGRGGWEFIHYSSVLLQAGIEFERDTTSSLFDLKFENGVFKIPPLRIHDSTVSLFQ NLIAYEQRFHGGQQYITSYFLLMDRLIDTPNDVELLVQRRIIENDFGGWEDISAFFNSICKQIVLQDFYYAGLCEDVNAYYNKQCYRYKADFRRDHCKNP WAIISLVAGFVLLGFTALQTVYSVLAYYK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G50150			Plant protein of unknown funct...		Potri.013G146700 [exp]	0	1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Potri.002G227600 [exp]	1.00	0.9606
AT5G45540			Protein of unknown function (D...		Potri.006G010900 [exp]	2.44	0.9424
					Potri.001G049700 [exp]	3.74	0.9132
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Potri.012G081300 [exp]	3.74	0.9466
					Potri.001G293200 [exp]	4.00	0.9113
AT4G31980			unknown protein		Potri.013G146600 [exp]	4.47	0.9399
					Potri.003G178500 [exp]	4.47	0.8811
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Potri.009G148900 [exp]	7.07	0.9035	Pt-PSK6.1
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G014800 [exp]	8.66	0.8870
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.006G084200 [exp]	9.16	0.9140	Pt-DOF2.3

Compare expression of checked genes

Potri.013G146700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.