Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69630 72 / 4e-13 F-box/RNI-like superfamily protein (.1) AT1G66310 66 / 3e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G18150 65 / 6e-11 RNI-like superfamily protein (.1) AT4G03220 61 / 1e-09 Protein with RNI-like/FBD-like domains (.1) AT1G78750 59 / 3e-09 F-box/RNI-like superfamily protein (.1) AT5G22720 58 / 1e-08 F-box/RNI-like superfamily protein (.1.2) AT1G78760 57 / 2e-08 F-box/RNI-like superfamily protein (.1) AT1G55030 57 / 2e-08 RNI-like superfamily protein (.1) AT2G39415 53 / 2e-08 F-box family protein (.1) AT5G02930 56 / 3e-08 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G395000 [exp] 134 / 1e-33 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.012G099400 [exp] 126 / 1e-30 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G146400 [exp] 92 / 1e-19 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.017G146500 [exp] 90 / 5e-19 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 85 / 4e-17 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 72 / 5e-13 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.013G151200 [exp] 71 / 1e-12 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.011G042900 [exp] 68 / 8e-12 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.013G151700 [exp] 64 / 2e-10 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 125 / 3e-30 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10018509 [exp] 70 / 3e-12 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10028722 [exp] 70 / 3e-12 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10018543 [exp] 65 / 1e-10 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030569 [exp] 62 / 7e-10 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 61 / 2e-09 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10020748 [exp] 58 / 7e-09 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10003696 [exp] 56 / 2e-08 AT3G51530 52 / 1e-07 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034418 [exp] 57 / 4e-08 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 56 / 7e-08 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G146800.1 pacid=42811543 polypeptide=Potri.013G146800.1.p locus=Potri.013G146800 ID=Potri.013G146800.1.v4.1 annot-version=v4.1 ATGATGACAGGAAATAGAATGAGACGTTTGATGAACAATAAGCCAATTCAAGAGGTTGACTTGATTTCTGAGTTGCCCGACCCCATCATTCAACATATCA TGTCTTCTTTGCCCTACAAAGATGCCGCAAGGATGAGTATTCTGTCCAAGAGATTTGCATCTGCATGGACTTCCTTTCCTATCATCTTTCTTGACGAAAC CCTGAACATGGGATCGTGCCTTGAGTTGACAGGTAAACAGAAATTAAACAGTTTTTTGAGCTATGTGGGTGCTTTTCTTTCTCGTCGCCGACTGGATGTT AGCTTAGAAAAATTTAGCTTTTGTTTTTGTCTAAATAATAGCTCTGAGCAACCAAATGGTGGTATTGAGAATGCAATTTGTTATGCAATAGAGAATAACG TGAAAGAGCTAGAGCTAGATTTTGTTGGAAAAAGTTTCAAATGTATGGCACATTATAGTTTGCCGATGAAAGTATTGTCTGCTCAAAGTGTTATGGTTTT GAGTTTGAAAGGGTTCATGTTGGAGCCACCCCAGAATTTGGTCTTGGATTTCCCTTTCATAAAAGAATTGAGATTGGAAAAGTGTAAGGGGATGCAAACA CTCAGTGTTTCAAGCCAAACACTCAAGATTGTGGTGTTAGAATCTTGTCAAAGGCTGGAGAAGGTTGAAATCGATGCTTCCAATCTCGAATCCTTCTCGT TCGGTGGAGGAGCAAACTCATCCTGCAGCGTCGATATCACCGCTTGCAAGTCCCTCGAATACTTATCTTTGAAGAATGCTGAGATCACAGATGAATGGAT TAAACATGAAGTTGCCCAGTTTCTTCGACTTGAGGTTTTCAAAGTTGTTGGTTGTAGACTATTGGAAAACTTCCATGTTTCCAACGCTAATCTTAAGACA GTGGAGCTAAGTGATTGCTCAAACTTACAGAAGATTGAGATTTATTCACGAAGCTTAAACACATTTGTTTACGGTGGTCAGTTAATGCCATCACAAGTTT TCATTTATTCTCCATCTTTCCATGCTAAGGTCTCATTGAGTGTAGATCATCCACTCCCCCATGATTGGTTCTCGAGCTTCAGGGATTTTCTTTCATGCTT CGACCATTGCAAAGAGTTGGAAATTGCTTGCAGTATTGAGATGGCTTTGATTGTTCCAATAGATTCAAGAGACAGCTTGCTTCCTCCATTGTATGACCTC AAGTATCTGAAGGTAGTCGCAAAATTTCCAACAAAATCGGAGGACCTCGTGGGCTTGTTGGATAGTTTGCTTTGGTTTGCTCCTCGTTTAACAGTATTAT CTTTTGTTTCGGGTAGCAAGGAAAAATCTCTTAAGTTTGAATATAATATAGCAGTAGCTATAGATGAAGATCTCGAGTGCTGCTACTCGATGCCTATAAA GTGTTGGCGACACTCTTTAAAGAAAGTTACAATGGAGAACTTTGAGGATCGTGAAGGTGCTATTCTGCAGAGGTTCTTCGCACAAAAGGCGACAAGGTTG GAAGCAACTTCAAGGGAAGACAGTGCTAGTGCTGATGCTTCAGCCGAGGAAGGAGTTTCTCAAGGTTCTGGTTCGGTGATCACTCGGAATATCGGTGATC TAGGGGCTATTATCATGGCTAACTTTTTTGATGTTAATGATACATTAGAAATTATGATGTGA
AA sequence Show only first row Show all	>Potri.013G146800.1 pacid=42811543 polypeptide=Potri.013G146800.1.p locus=Potri.013G146800 ID=Potri.013G146800.1.v4.1 annot-version=v4.1 MMTGNRMRRLMNNKPIQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDETLNMGSCLELTGKQKLNSFLSYVGAFLSRRRLDV SLEKFSFCFCLNNSSEQPNGGIENAICYAIENNVKELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPPQNLVLDFPFIKELRLEKCKGMQT LSVSSQTLKIVVLESCQRLEKVEIDASNLESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFKVVGCRLLENFHVSNANLKT VELSDCSNLQKIEIYSRSLNTFVYGGQLMPSQVFIYSPSFHAKVSLSVDHPLPHDWFSSFRDFLSCFDHCKELEIACSIEMALIVPIDSRDSLLPPLYDL KYLKVVAKFPTKSEDLVGLLDSLLWFAPRLTVLSFVSGSKEKSLKFEYNIAVAIDEDLECCYSMPIKCWRHSLKKVTMENFEDREGAILQRFFAQKATRL EATSREDSASADASAEEGVSQGSGSVITRNIGDLGAIIMANFFDVNDTLEIMM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69630			F-box/RNI-like superfamily pro...		Potri.013G146800 [exp]	0	1
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Potri.008G108500 [exp]	5.83	0.6852
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Potri.010G044500 [exp]	5.83	0.8770
					Potri.012G028432 [exp]	8.94	0.8556
AT4G18380			F-box family protein (.1.2)		Potri.003G203500 [exp]	9.21	0.8488
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	10.58	0.8423
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	10.67	0.8446
AT1G72490			unknown protein		Potri.001G166700 [exp]	12.40	0.7571
AT1G68510	AS2	LBD42	LOB domain-containing protein ...		Potri.008G120600 [exp]	13.56	0.8308
AT4G38040			Exostosin family protein (.1)		Potri.012G091600 [exp]	16.30	0.7964
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.012G007700 [exp]	16.97	0.8071

Compare expression of checked genes

Potri.013G146800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.