Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28210 357 / 1e-122 EMB1923 embryo defective 1923 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031620 [exp] 332 / 9e-113 AT4G28210 297 / 4e-99 embryo defective 1923 (.1) Lus10033723 [exp] 324 / 2e-109 AT4G28210 293 / 2e-97 embryo defective 1923 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G146900.1 pacid=42810940 polypeptide=Potri.013G146900.1.p locus=Potri.013G146900 ID=Potri.013G146900.1.v4.1 annot-version=v4.1 ATGTCGAGACCAGTAACCACACTCTCTTCTCCAACTCTCAAAATCCCATCCTTTTCTCGTCTTTCCCTTCAAACCCACAAAAGCCAAACCATTTCTTGTC ACTCTTTAGCTATAAAGGCTAGACCTTTATGCAGCCATAACCAGACGCTGAAAAGATTTGGTTTGTTTCTGGACAGTAGAGATAGGAAGTTGGGGTTTCG TGTTAATGCAGAGAATGGAGAAGGAGAGAGCGAACGGGATGGTGTATTTGATGATGGTGAACGTGGAGAGAGTACTATGCCTGAGAGGTTTAGGTACTTA ACTAAAGAAGCACCTGACCCTCCTGTTAGGTGGCCTTGGTTTGTGGCTCTGGGTTTCCTTATCTATGCATGGAGAGCAGTCTTATTTGAACTAGGTAACT GGAAAAGGGGTGTCATAGCTATTATTGGTTTTGTGGGATACCTCCTGAAACTTCTGTTGGCTGTTGTCTTCCATTTCATTGGGGATCCAATCACCTCTCT GATCAGATGTATAGAGACTGCAATCTACACATTTCAGGCTTTCTACTCTGGAATAGTACGATCCGCTCCTGTTCCAGAACTGACCTTGATTATCATGCTT GCATCAGCAGTTCTTGCTATTGGCGAAGCTGCCGCACCAAACTCTGTAAGCAGGCAACCTTATCTTCTCACAGTATCTGGCCTAATTGGCTATGCAGCAG TAAGAAACTACATCTCTGAGCCACTTTTCTGGACACTTCTACTGGGTTTATATGCTTTCTCTAGATTCATTAAGAAGAGAGATGATGTTACATCTGCCTT GCCTGCTGCAGCTGTACTAGCTGCAATCGGAGAACCTTGGGTTAGAGTTTTGGTAATGGTTTCATATCTAGCTTTAGCTATTTCTTACCATTCAAAGCAG CTCGCCAAAGGAAAGGAAGAAGTTGAAGTTGTGACAGCGGATACTGGTAGTAGGGTTCCAGTGCCACTGCTGTGCGCAGCTTTAGCCATTGGTATTCATG TTGCTGCTAAGTGGGCTGGCTACCGCCACTTGACATGGATGTTAGTATGA
AA sequence Show only first row Show all	>Potri.013G146900.1 pacid=42810940 polypeptide=Potri.013G146900.1.p locus=Potri.013G146900 ID=Potri.013G146900.1.v4.1 annot-version=v4.1 MSRPVTTLSSPTLKIPSFSRLSLQTHKSQTISCHSLAIKARPLCSHNQTLKRFGLFLDSRDRKLGFRVNAENGEGESERDGVFDDGERGESTMPERFRYL TKEAPDPPVRWPWFVALGFLIYAWRAVLFELGNWKRGVIAIIGFVGYLLKLLLAVVFHFIGDPITSLIRCIETAIYTFQAFYSGIVRSAPVPELTLIIML ASAVLAIGEAAAPNSVSRQPYLLTVSGLIGYAAVRNYISEPLFWTLLLGLYAFSRFIKKRDDVTSALPAAAVLAAIGEPWVRVLVMVSYLALAISYHSKQ LAKGKEEVEVVTADTGSRVPVPLLCAALAIGIHVAAKWAGYRHLTWMLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28210		EMB1923	embryo defective 1923 (.1)		Potri.013G146900 [exp]	0	1
AT1G07700			Thioredoxin superfamily protei...		Potri.014G029200 [exp]	2.44	0.9634
					Potri.001G230200 [exp]	5.47	0.9500
AT3G09250			Nuclear transport factor 2 (NT...		Potri.016G105600 [exp]	5.65	0.9594
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Potri.002G112500 [exp]	7.74	0.9475
AT5G24020		ARC11, ATMIND1,...	ACCUMULATION AND REPLICATION O...		Potri.004G080100 [exp]	9.59	0.9267	Pt-MIND.1
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Potri.001G060200 [exp]	11.53	0.9459
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Potri.017G125100 [exp]	12.00	0.9399
AT1G48460			unknown protein		Potri.014G038800 [exp]	15.58	0.9341
AT2G16800			high-affinity nickel-transport...		Potri.004G175700 [exp]	16.97	0.9354
AT2G44640			unknown protein		Potri.014G044200 [exp]	18.57	0.9178

Compare expression of checked genes

Potri.013G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.