Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20800 827 / 0 NDB4 NAD(P)H dehydrogenase B4 (.1) AT4G21490 791 / 0 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 781 / 0 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT4G28220 724 / 0 NDB1 NAD(P)H dehydrogenase B1 (.1) AT1G07180 197 / 2e-56 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT2G29990 197 / 3e-56 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT5G22140 50 / 2e-06 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT5G03630 49 / 6e-06 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G44190 47 / 2e-05 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT3G27820 45 / 0.0001 ATMDAR4 monodehydroascorbate reductase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G147300 [exp] 920 / 0 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.004G034100 [exp] 820 / 0 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.011G042500 [exp] 803 / 0 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.013G147200 [exp] 752 / 0 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G036300 [exp] 230 / 4e-68 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 226 / 1e-66 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.009G047100 [exp] 196 / 5e-56 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.001G217800 [exp] 51 / 2e-06 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.006G114800 [exp] 48 / 2e-05 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018540 [exp] 847 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10039768 [exp] 841 / 0 AT2G20800 718 / 0.0 NAD(P)H dehydrogenase B4 (.1) Lus10006737 [exp] 791 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10020087 [exp] 787 / 0 AT4G05020 888 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10011259 [exp] 784 / 0 AT4G05020 909 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10018541 [exp] 749 / 0 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10039769 [exp] 702 / 0 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018427 [exp] 677 / 0 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002599 [exp] 542 / 0 AT4G05020 630 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Lus10002601 [exp] 522 / 1e-179 AT4G05020 609 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00070 [poplar] [flax] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.013G147400.1 pacid=42812097 polypeptide=Potri.013G147400.1.p locus=Potri.013G147400 ID=Potri.013G147400.1.v4.1 annot-version=v4.1 ATGAGAGGGTCTGCATTCTTCCAGAGAGCCTTTAGAACTTTTCAAGAGCACCCTACTTTCTTTAAGCTGCTTATTGTCTCCACCGTCAGTGGTGGAGGTC TGTTAACGTTTTCTGATGCCAGTCCATTCCAAGGATTGATCACAGACTCATCTCAGAATGAAGGCAAGAAAAAGAAGGTGGTAGTTCTTGGAACTGGTTG GGCAGGCACAAGTTTTTTGAAAAACCTGAAGAGCTCTTCCTATGATGTTCAAGTCGTTTCTCCGAATAACTTCTTCACGTTCACTCCTTTGTTACCGAGT GTAACTAATGGAACGGTGGAAGCTCGCAGCATAGTAGAGCCAATTCGCAATATTGTGAAAAAGAAACCTTACAATGTTGAGTTCAAGGAAGCTGAATGTT ATAAGATTGATCCAGTAAATAAGAAAGTTTATTGTCGTTCTAACCAATCCTCAACTTTGGATGGAATTGAAGAATTCACAGTTGATTATGATGTCTTGAT ATTGGCCATGGGAGCTCGTGTAAATACTTTCAACACCCCCGGTGTCGAGGAGCATGCTCATTTCCTGAAGGAAGTTGGAGACGCGCTGAGGCTTCGTAAG TCAATAATTGACTGTTACGAGCGTGCAAGCCTTCCGAGTGTAAGCGAAGAAGAGAAGAAGCGGGTGATGCATTTTGTAGTTGTTGGAGGTGGTCCAACAG GTGTGGAGTATGCTGCAGAGCTACACGACTTGGCATTTGATGATATGGCAAAGCTATATCCCTCAGCTAAAGACTACCTGAAAATAACCCTTCTTGAGGC TGGTGATCACATTTTGAACATGTTTGACAAACGAATTACTACATTTGCTACTGAGAAATTCCAAAGAGATGGCATTGATGTAAAGACAGGATCAATGGTT GTAAAAGTGTCTGATAAGGATATTTCTACTAAGGAGAGAAAAACCGGTGAAATTGTTTCTGTACCATACGGAGTGGTCCTCTGGTCAACCGGCATTGCTA CTCGTCCTGTTGTCAGGGATTTCATGAACCACATTGATCAGGTCAAAAGGCGTGTTCTGGCAACCGATGAATGGCTGAGGGTTGAAGGCTGCGAAGATGT ATATGCTCTAGGTGACTGTGCGACTATAAATCAACGCAAAGTCATGGAAGATATAGCAGCAATATTCAGGAAGGCAGACAAGACCAACACTGGTACTCTA GATCTTAAAGACTTCAAAGAAGTTGTTGGCCACATCTGTGAGAGATACCCTCAAGTTGAGCTTTACTTGCAAAAGAACAAACTGAAAAGCTTTGATGCTT TACTGAAGAATGCTCAAGGAGATGACAAGAAACAAATAGATATCGAAATATTTAAGAAGGCTCTATCCGAAGTTGATTCTCAAATGAAAAGTCTCCCGCC AACTGCTCAGGTGGCTGCACAACAAGGAGAATACCTTGCAAAATGTTTCAACAGAAAGGAGCTTTGTGAAAAGAATCCTGAGGGTCCACTGAGGTTCAGG GCTTCAGGCCGACACCAGTTTCATCCCTTCAGGTACAGGCACTTTGGACAATTTGCTCCATTGGGTGGAGAGCAGACTGCAGCTCAACTTCCAGGAGATT GGGTTTCGATCGGACATAGCGCTCAGTGGCTCTGGTACTCAGTTTATGCAAGCAAGCTAGTTAGCTGGCGTACAAGAATGTTGGTGATATCTGACTGGTC GAGAAAGTTTATATTTGGAAGGGACTCCAGCAAAATCTGA
AA sequence Show only first row Show all	>Potri.013G147400.1 pacid=42812097 polypeptide=Potri.013G147400.1.p locus=Potri.013G147400 ID=Potri.013G147400.1.v4.1 annot-version=v4.1 MRGSAFFQRAFRTFQEHPTFFKLLIVSTVSGGGLLTFSDASPFQGLITDSSQNEGKKKKVVVLGTGWAGTSFLKNLKSSSYDVQVVSPNNFFTFTPLLPS VTNGTVEARSIVEPIRNIVKKKPYNVEFKEAECYKIDPVNKKVYCRSNQSSTLDGIEEFTVDYDVLILAMGARVNTFNTPGVEEHAHFLKEVGDALRLRK SIIDCYERASLPSVSEEEKKRVMHFVVVGGGPTGVEYAAELHDLAFDDMAKLYPSAKDYLKITLLEAGDHILNMFDKRITTFATEKFQRDGIDVKTGSMV VKVSDKDISTKERKTGEIVSVPYGVVLWSTGIATRPVVRDFMNHIDQVKRRVLATDEWLRVEGCEDVYALGDCATINQRKVMEDIAAIFRKADKTNTGTL DLKDFKEVVGHICERYPQVELYLQKNKLKSFDALLKNAQGDDKKQIDIEIFKKALSEVDSQMKSLPPTAQVAAQQGEYLAKCFNRKELCEKNPEGPLRFR ASGRHQFHPFRYRHFGQFAPLGGEQTAAQLPGDWVSIGHSAQWLWYSVYASKLVSWRTRMLVISDWSRKFIFGRDSSKI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Potri.013G147400 [exp]	0	1
AT1G78720			SecY protein transport family ...		Potri.011G114200 [exp]	12.00	0.6722
AT5G58200			Calcineurin-like metallo-phosp...		Potri.018G111500 [exp]	13.41	0.6722
					Potri.012G136500 [exp]	15.29	0.6572
					Potri.001G174350 [exp]	21.35	0.6385
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.001G173600 [exp]	33.27	0.5602	Pt-CPP1.21
					Potri.002G113501 [exp]	52.99	0.4847
AT5G26330			Cupredoxin superfamily protein...		Potri.004G171100 [exp]	69.64	0.5412
					Potri.014G132050 [exp]	76.47	0.4516
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Potri.008G128301 [exp]	149.85	0.4344
AT2G32835		RALFL16	RALF-like 16 (.1)		Potri.018G007800 [exp]	205.62	0.4162

Compare expression of checked genes

Potri.013G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.