Plant FIBer expression Database

Potri.013G147500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28230 249 / 2e-78 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G116200
[exp]
666 / 0 AT4G28230 257 / 1e-81 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018539
[exp]
310 / 3e-102 AT4G28230 232 / 1e-72 unknown protein
Lus10039766
[exp]
300 / 3e-98 AT4G28230 234 / 2e-73 unknown protein
Lus10033724
[exp]
231 / 3e-71 AT4G28230 210 / 6e-64 unknown protein
Lus10031619
[exp]
217 / 7e-66 AT4G28230 206 / 2e-62 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G147500.2 pacid=42810781 polypeptide=Potri.013G147500.2.p locus=Potri.013G147500 ID=Potri.013G147500.2.v4.1 annot-version=v4.1
ATGAGTAATATTCTTCAATACCCGGATGTGGTAGATGCTCCTGAAGTTCAGATATGGAACAATGCAGCGTTTGATAATGGAGAATCAGAGGATTCTTTGA
ATCTTAAGTCTTCTTGGTGGAATCAAAGTCTTGAATCCGATGCAAGCAAAGAGAATCTTAGCCCAGTTTGTGAAAAATCTTCTCCTATTTATGTCAATTC
TTCAAAACCCACCAAGCCACTTCAATCTAATCCCAATCCTTTTAACTCACAAGGGAGTAATTCAATGAAGGTTGGGCTGTCGAAGATGGTGGAGAAAAAT
GAGGAGATCAAGAATCATGATGAGAAAAAGATTGATATAGAGATTGAAGAGATCGAGAAGGAGATTAAGCGTTTATCTTCAAGACTTGAAGTGCTTAGGC
TTGAAAAGGCAGAGAGGAATTTATCAAAGACTGTTGAAAAGAGAGGGAGGGTTGTGGCTGCAAAATTTATGGAGCAGAAACAGAGTGTCAAGATTGAAGA
GCCATTGGTTTCAAGTGCTAAATCGAAGATTAATAGAAGAGGGGTCAGTTTAGGGCCAAGTGAGATTTTCTCTGGATCCAAATCAAGGTTATTGTTTGGA
AAACAAGAGATGAAAACTCCTGTTTCGACGCAGAATCGGCGGAAATCGTGTTTTTGGAAGCTTGAAGAGATTGATGAGTTGAAGGCAACTAAAGAGAGGG
GAAAAAGTTTGAGTGTTAGTCCGAGATCACGAAAAAATGTGTCCAAAATCCAAGTTCCTAAACAGGCTGTTACTACTGTGGGGTCTAGAAGGTCAGTGAA
GAAAGAAGATGGGGTTATTGCTTCAATTCAGCCAAAGAATCTATTCAAAGACGGGGAAAGATCTGTGCCTAATAAGAAACCCTTGAAGCCCGGACGGGTG
GTGGCTAGTAGGTATAATCAGATTGGAACAAATCAGTCTAATGGGAATCTAACTGCTAGCGAGGCTCGGAAGAGGTCTTTGCCGGATAATGAGAAGGAAG
ATGTTAATAAGAGGCGGGCTTCACGTGGTAATGGGGTGAGTCAGAGAGCGGAGAGTGGTAGAGTGAAGAAGAGGTGGGAGATTCCAAGTGAAGTAGTGGT
ATACAAGGATGATGCTGAGGAGGAATCTCCGCAGGCAGTTTCTGTAGTGACCGATATGTTGCCGAATATTAAGACTGTCAGAAGTGTTGCTGAGACTCCA
AGGGACTCAGGGCCGGCAAAAAGAGTGGCTGATTTGGTTGGGAGGAAATCATACTTTCCCCCCGTCGAGGAGACTGCAGCAGGGGACTCTGTTTGCCAGG
CTCTTAGTTTTGCAGAAGAGGAGGATGGTGAGAACGAGTAA
AA sequence
>Potri.013G147500.2 pacid=42810781 polypeptide=Potri.013G147500.2.p locus=Potri.013G147500 ID=Potri.013G147500.2.v4.1 annot-version=v4.1
MSNILQYPDVVDAPEVQIWNNAAFDNGESEDSLNLKSSWWNQSLESDASKENLSPVCEKSSPIYVNSSKPTKPLQSNPNPFNSQGSNSMKVGLSKMVEKN
EEIKNHDEKKIDIEIEEIEKEIKRLSSRLEVLRLEKAERNLSKTVEKRGRVVAAKFMEQKQSVKIEEPLVSSAKSKINRRGVSLGPSEIFSGSKSRLLFG
KQEMKTPVSTQNRRKSCFWKLEEIDELKATKERGKSLSVSPRSRKNVSKIQVPKQAVTTVGSRRSVKKEDGVIASIQPKNLFKDGERSVPNKKPLKPGRV
VASRYNQIGTNQSNGNLTASEARKRSLPDNEKEDVNKRRASRGNGVSQRAESGRVKKRWEIPSEVVVYKDDAEEESPQAVSVVTDMLPNIKTVRSVAETP
RDSGPAKRVADLVGRKSYFPPVEETAAGDSVCQALSFAEEEDGENE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28230 unknown protein Potri.013G147500
[exp]
0 1
AT1G02730 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLU... Potri.002G200300
[exp]
10.04 0.9238 ATCSLD5.2
AT2G16270 unknown protein Potri.001G289100
[exp]
15.03 0.9218
AT5G06150 CYC1BAT, CYCB1;... cyclin B 1;2, Cyclin family pr... Potri.006G035200
[exp]
16.88 0.9176
AT5G01420 Glutaredoxin family protein (.... Potri.010G243700
[exp]
17.66 0.8687
AT5G15510 TPX2 (targeting protein for Xk... Potri.004G118700
[exp]
24.00 0.9133
AT1G66250 O-Glycosyl hydrolases family 1... Potri.004G086400
[exp]
24.49 0.9130
AT4G28430 Reticulon family protein (.1) Potri.017G014300
[exp]
28.24 0.9113
AT4G14310 Transducin/WD40 repeat-like su... Potri.010G069200
[exp]
30.41 0.8191
AT4G14330 P-loop containing nucleoside t... Potri.008G169000
[exp]
31.03 0.9101
AT5G44560 VPS2.2 SNF7 family protein (.1.2) Potri.001G442500
[exp]
31.36 0.9059

Potri.013G147500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.