Plant FIBer expression Database

Potri.013G147600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12470 1736 / 0 zinc ion binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033725
[exp]
1701 / 0 AT1G12470 1631 / 0.0 zinc ion binding (.1)
Lus10031618
[exp]
1674 / 0 AT1G12470 1595 / 0.0 zinc ion binding (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF00637 Clathrin Region in Clathrin and VPS
CL0020 PF05131 Pep3_Vps18 Pep3/Vps18/deep orange family
Representative CDS sequence
>Potri.013G147600.2 pacid=42811105 polypeptide=Potri.013G147600.2.p locus=Potri.013G147600 ID=Potri.013G147600.2.v4.1 annot-version=v4.1
ATGGATCAATCACGGCAAGTATTCACCGTCGATCTCCTAGAACGGTACGCATCAAAAGGCCGTGGTGTTATCACCTGTATGGCAGCAGGAAACGACGTCA
TCTTATTAGGTACCAGCAAAGGCTGGCTTATTCGACACGATTTCGGCGCCGGCGGTTCTTCCGATTTTGATCTTTCTAGTGGACGGCCTGGCGATCAATC
TATACATAGAGTGTTTGTGGATCCTGGTGGTAGCCACTGTATCGCCACCGTTATTGGTGGAGGTGGTGCGGAGACGTTTTATATGCATGCTAAATGGAGT
AAGCCACGTGTGCTTGGGAGGTTGAAAGGTTTGATCGTTAATGCTGTTGCTTGGAATCGGCAACTGATTACTGAAGCGTCTACGAAGGAAGTTGTTATTG
GGACGGATAATGGGCAGCTGTTTGAGATGGCTGTAGATGAGAAAGATAAAAGGGAGAAGTATATAAAGTTTTTGTTTGAATTAAAGGAATTGCCTGAAGC
TTTCATGGCTTTGCAGATGGAAACGGCTAGCTTAAGCAATGTAACCAGATATTATGTGATGGCTGTTACTCCAACACGACTTTATTCTTTTACTGGAATT
GGATTATTGGAGACAGTTTTTGCTAGTTACTTGGAACGCGCGGTGCATTTTATGGAACTGCCAGGGGAAATACCAAACAGTGAATTGCATTTTTTTATCA
AGCAAAGAAGAGCAATGCATTTTGCATGGCTTTCTGGAGCAGGTATCTATCACGGTAGCTTAAATTTTGGAGCGCAGCATAGTTACATAAATGGTGATGA
GAATTTTGTGGAGAATAAGGCTCTTTTGGACTATTCAAAATTAAGTGATGGTGTTGATGCAGTTAAACCGAGCTCAATGGCAGTTTCAGAATTTCATTTC
TTACTTCTTATTGGAAACAAGGTTAAGGTTGTTAACAGAATCAGTGAGCAAATTATAGAGGAGCTTCAGTTTGACCAAACATCAGAATCGGTTTCAAGTG
GTGTTATCGGATTATGCAGTGATGCCACTGCTGGCTTGTTCTATGCATATGACCAAAATTCTATTTTTCAGGTGTCTGTTAACGATGAAGGGAGAGATAT
GTGGAAGGTGTATCTAGACATGAAAGACTATGCTGCAGCTTTAGCAAATTGCCGAGACCCTCTCCAGAGAGACCAAGTATATTTAGTGCAGGCAGATGCT
GCTTTCACCTCCAGGGATTTTCTAAGAGCAGCATCGTTCTATGCAAAAATTAATTACATACTATCATTTGAGGAAGTTACGTTGAAGTTTATTAGTGTAG
GCGAACAGGATGCTTTGCGAACTTTCTTGTTGCGGAAGCTTGATAATCTTGCCAAGGATGACAAGTGCCAAATAACAATGATTTCCACATGGGCAACTGA
ATTGTACTTGGATAAGATAAATCGGCTACTCTTGGAAGAGGATAATGCTTTGGACAAACATAGTTTTGAGTACCAATCAATCAATCAAGAGTTTCGTGCT
TTCCTCAGTGACTGCAAGGATGTCTTGGATGAGGCAACTACTATGAGACTTCTAGAGAGCTATGGCAGGGTTGAAGAACTAGTGTATTTTGCTAGTCTGA
AGGAACAGTATGAAATTGTAATTCACCACTATGTTCAGCAAGGAGAAACAAAGAAAGCATTGGAAGTGCTTCAGAAACCTGCTGTTCCAATAGACCTTCA
GTACAAGTTTGCCCCAGATCTCATTGTTCTTGATGCATATGAAACAGTTGAGTCATGGATGACCACAAAAAACCTGAACCCAAGAAAACTGATTCCTGCA
ATGATGCGTTATTCAAGTGAACCTCATGCAAAGAATGAAACCCATGAAGTCATCAAATATTTGGAATTCTGTGTTCATTGTTTGCATAATGAGGATCCTG
GAGTTCACAACTTGCTTCTTTCTCTCTATGCTAAACAGGAAGATGATGATGCACTTTTGCGTTTCCTACAATGCAAGTTTGGGAAAGGACGAGAAAATGG
TCCAGATTTCTTCTATGATCCCAAGTATGCCTTGCGCCTTTGCCTCAAAGAAAAGCGGATGCGTGCCTGTGTTCACATATACAGCATGATGTCCATGCAC
GAAGAAGCAGTTGCTCTTGCTCTACAGGTTGACCCCGAGCTTGCAATGGCTGAAGCTGACAAGGTGGAAGATGACGAAGATTTGAGAAAGAAGCTTTGGC
TTATGGTTGCCAAGCATGTTATTGAACAAGAAAAGGGAACTAAAAGGGAGAATATAAGGAAGGCAATAGCATTTCTCAAGGAAACTGATGGCCTTCTAAA
GATTGAGGATATATTACCATTCTTTCCAGACTTTGCCCTAATTGATGACTTCAAGGAGGCAATTTGCTCATCATTGGAGGATTACAACAACCAAATCGAA
CAACTAAAAGAGGAGATGAATGATGCTACACATGGCGCTGACAACATAAGAAATGATATTAGTGCACTTGCTCAAAGATATGCTGTCATTGACCGTGACG
AGGAATGTGGGGTTTGTAAGCGCAAAATCTTGATTGTGGGTGGGGACTACCGTATGTCTCGGGGCTATACATCAGTAGGACAAATGGCTCCCTTCTATGT
ATTTCCATGTGGGCATGCCTTTCATGTGCATTGCTTGATTGCCCATGTGACATGTTCTGTCAATGAAACTCAAGCAGAATATATACTGGATCTGCAGAAG
CAGCTTACGTTGCTTGGTGACGGAGCTAGGAAAGACATGAATGGTGGCATAACTGAGGATTCCATTACTAGCATGACTCCTGCAGATAAGCTCCGTTCTC
AGCTGGATGATGCAATAGCAAGCGAATGTCCATTTTGTGGTGAATTGATGATCCGTCAGATCTCTTTGCCTTTTATACTCTCTGAAGAAGCACTGCTGGT
TAATTCATGGGAGATAAAACCACAGAACAACCTTGCGAACATGAGGACCCTCTCTTTACCGGTATGA
AA sequence
>Potri.013G147600.2 pacid=42811105 polypeptide=Potri.013G147600.2.p locus=Potri.013G147600 ID=Potri.013G147600.2.v4.1 annot-version=v4.1
MDQSRQVFTVDLLERYASKGRGVITCMAAGNDVILLGTSKGWLIRHDFGAGGSSDFDLSSGRPGDQSIHRVFVDPGGSHCIATVIGGGGAETFYMHAKWS
KPRVLGRLKGLIVNAVAWNRQLITEASTKEVVIGTDNGQLFEMAVDEKDKREKYIKFLFELKELPEAFMALQMETASLSNVTRYYVMAVTPTRLYSFTGI
GLLETVFASYLERAVHFMELPGEIPNSELHFFIKQRRAMHFAWLSGAGIYHGSLNFGAQHSYINGDENFVENKALLDYSKLSDGVDAVKPSSMAVSEFHF
LLLIGNKVKVVNRISEQIIEELQFDQTSESVSSGVIGLCSDATAGLFYAYDQNSIFQVSVNDEGRDMWKVYLDMKDYAAALANCRDPLQRDQVYLVQADA
AFTSRDFLRAASFYAKINYILSFEEVTLKFISVGEQDALRTFLLRKLDNLAKDDKCQITMISTWATELYLDKINRLLLEEDNALDKHSFEYQSINQEFRA
FLSDCKDVLDEATTMRLLESYGRVEELVYFASLKEQYEIVIHHYVQQGETKKALEVLQKPAVPIDLQYKFAPDLIVLDAYETVESWMTTKNLNPRKLIPA
MMRYSSEPHAKNETHEVIKYLEFCVHCLHNEDPGVHNLLLSLYAKQEDDDALLRFLQCKFGKGRENGPDFFYDPKYALRLCLKEKRMRACVHIYSMMSMH
EEAVALALQVDPELAMAEADKVEDDEDLRKKLWLMVAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFALIDDFKEAICSSLEDYNNQIE
QLKEEMNDATHGADNIRNDISALAQRYAVIDRDEECGVCKRKILIVGGDYRMSRGYTSVGQMAPFYVFPCGHAFHVHCLIAHVTCSVNETQAEYILDLQK
QLTLLGDGARKDMNGGITEDSITSMTPADKLRSQLDDAIASECPFCGELMIRQISLPFILSEEALLVNSWEIKPQNNLANMRTLSLPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12470 zinc ion binding (.1) Potri.013G147600
[exp]
0 1
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Potri.008G035300
[exp]
3.46 0.8099
AT5G58100 unknown protein Potri.018G150600
[exp]
5.74 0.7882
AT5G20280 SPSA1, ATSPS1F sucrose-phosphate synthase A1,... Potri.006G064300
[exp]
6.08 0.7469 Pt-SPS.1
AT2G45540 WD-40 repeat family protein / ... Potri.002G150000
[exp]
7.68 0.8222
AT5G19660 ATSBT6.1 ,ATS1P SITE-1 protease (.1) Potri.018G081400
[exp]
10.39 0.7922
AT5G13390 NEF1 no exine formation 1 (.1) Potri.001G068900
[exp]
10.81 0.8074
AT3G03810 EDA30 embryo sac development arrest ... Potri.019G036600
[exp]
10.90 0.7696
AT3G48860 unknown protein Potri.015G104600
[exp]
10.95 0.7943
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.014G014700
[exp]
14.00 0.7936 Pt-ECA3.3
AT4G36630 EMB2754 EMBRYO DEFECTIVE 2754, Vacuola... Potri.007G025700
[exp]
16.49 0.7701

Potri.013G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.