Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21450 266 / 4e-89 PapD-like superfamily protein (.1.2.3) AT5G54110 248 / 1e-82 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 229 / 7e-75 PapD-like superfamily protein (.1) AT4G00170 52 / 9e-08 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 50 / 5e-07 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT1G08820 49 / 1e-06 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT1G51270 46 / 1e-05 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G45140 42 / 0.0002 PVA12 plant VAP homolog 12 (.1) AT2G23830 39 / 0.0007 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G116400 [exp] 340 / 1e-118 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.011G041900 [exp] 281 / 6e-95 AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) Potri.004G033500 [exp] 276 / 3e-93 AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) Potri.011G126200 [exp] 262 / 5e-88 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.001G408200 [exp] 258 / 3e-86 AT5G54110 322 / 3e-111 membrane-associated mannitol-induced (.1) Potri.002G144800 [exp] 54 / 1e-08 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.014G060900 [exp] 52 / 1e-07 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 49 / 1e-06 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 47 / 3e-06 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002595 [exp] 276 / 5e-93 AT4G21450 389 / 4e-137 PapD-like superfamily protein (.1.2.3) Lus10018420 [exp] 274 / 3e-92 AT4G21450 383 / 6e-135 PapD-like superfamily protein (.1.2.3) Lus10018534 [exp] 263 / 8e-88 AT4G21450 316 / 2e-108 PapD-like superfamily protein (.1.2.3) Lus10039757 [exp] 263 / 8e-88 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10037873 [exp] 244 / 9e-81 AT5G54110 331 / 6e-115 membrane-associated mannitol-induced (.1) Lus10036495 [exp] 59 / 3e-10 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10010360 [exp] 59 / 5e-10 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 52 / 2e-07 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 52 / 2e-07 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 46 / 1e-05 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.013G147800.2 pacid=42811993 polypeptide=Potri.013G147800.2.p locus=Potri.013G147800 ID=Potri.013G147800.2.v4.1 annot-version=v4.1 ATGCCATTTTGGCAAACAAGCAATGGCAATGGCAATGCCGCTTCTTCTTCTACTACTACCACTTCTTCATCTTCGACATCTTCAAGTTCCATGAGTAGTA ATAACAGTAATGGCAATAATGGTTGTCAACAGAACCAAAGTAACCAGCTTGGAGAGACAAGATCGAGTCTTTATTATTCGACTAATGCAATATCGTTTGT TACTAAGTCTTTGTTGCCTACTAGAAGAAGACTCAGGCTTGATCCTCCTAACAAGCTCTTCTTTCCTTATGAACCAGGTAAACAGGTTAGGAGTGCAATT GGCATCAAGAACACTTGCAAGTATCATGTAGCTTTCAAGTTCCAAACGACTGCACCAAAGAGCTGTTACATGCGTCCTCCCGGGGCTATACTTGCTCCTG GAGAAAGTCTTACCGCAACTGTATTCAAGTTTGTGGAACCTCCAGAGAACAATGATAGACAAATGGATCAGAGGAGCAGGGTTAAGTTCAAGATCATGAG CTTGAAAGTGAAAGGAGAAATGGAATATGTTCCTGAGATGTTTGACGAGCAGAAGGATCAAGTAGCAGTTGAGCAAATTCTGCGAGTAATTTTTCTTGAT CCAGAATGCCCTAGCCCTGCACTGGAAAAACTTAAAAGACAACTGGCTGAGGCTGAAGCTGAGCTTGAGGCACGCAAGAAGCCTCCGGAAGACGCAGGTC CCCGAGTCGTCAACGAAGGACTTGTTATAGATGAGTGGAAAGAGCGGAGGGAAAGATACCTGGCACGCCAGCAGGTTGAAGTTGATTCTGTGTGA
AA sequence Show only first row Show all	>Potri.013G147800.2 pacid=42811993 polypeptide=Potri.013G147800.2.p locus=Potri.013G147800 ID=Potri.013G147800.2.v4.1 annot-version=v4.1 MPFWQTSNGNGNAASSSTTTTSSSSTSSSSMSSNNSNGNNGCQQNQSNQLGETRSSLYYSTNAISFVTKSLLPTRRRLRLDPPNKLFFPYEPGKQVRSAI GIKNTCKYHVAFKFQTTAPKSCYMRPPGAILAPGESLTATVFKFVEPPENNDRQMDQRSRVKFKIMSLKVKGEMEYVPEMFDEQKDQVAVEQILRVIFLD PECPSPALEKLKRQLAEAEAELEARKKPPEDAGPRVVNEGLVIDEWKERRERYLARQQVEVDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21450			PapD-like superfamily protein ...		Potri.013G147800 [exp]	0	1
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Potri.016G121900 [exp]	1.00	0.9341
AT5G06470			Glutaredoxin family protein (....		Potri.006G201300 [exp]	3.16	0.9302
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	3.46	0.9262
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	4.24	0.9337	KDSA.1
AT3G25130			unknown protein		Potri.002G246400 [exp]	5.65	0.9316
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	5.91	0.9245
AT2G36570			Leucine-rich repeat protein ki...		Potri.006G117200 [exp]	7.74	0.9317
AT3G60550		CYCP3;2	cyclin p3;2 (.1)		Potri.014G066400 [exp]	8.36	0.9195
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.014G025300 [exp]	11.40	0.9174
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	12.64	0.9114

Compare expression of checked genes

Potri.013G147800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.