Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20900 765 / 0 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT4G28130 655 / 0 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT5G57690 266 / 7e-83 ATDGK4 diacylglycerol kinase 4 (.1) AT4G30340 252 / 2e-77 ATDGK7 diacylglycerol kinase 7 (.1) AT2G18730 245 / 8e-75 ATDGK3 diacylglycerol kinase 3 (.1) AT5G63770 143 / 8e-37 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 117 / 1e-27 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G408500 [exp] 692 / 0 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.018G096700 [exp] 266 / 3e-83 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 258 / 1e-79 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.007G097900 [exp] 150 / 9e-39 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 143 / 3e-36 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 119 / 2e-28 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.006G172400 [exp] 47 / 8e-07 AT5G57690 83 / 2e-20 diacylglycerol kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039747 [exp] 734 / 0 AT2G20900 751 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10031612 [exp] 718 / 0 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10033732 [exp] 711 / 0 AT2G20900 730 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10018527 [exp] 655 / 0 AT2G20900 681 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10019987 [exp] 262 / 2e-81 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10015514 [exp] 261 / 4e-81 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10006991 [exp] 249 / 5e-76 AT2G18730 677 / 0.0 diacylglycerol kinase 3 (.1) Lus10008907 [exp] 124 / 1e-32 AT2G18730 322 / 1e-109 diacylglycerol kinase 3 (.1) Lus10012719 [exp] 130 / 7e-32 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10010896 [exp] 130 / 7e-32 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [poplar] [flax] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [poplar] [flax] PFK PF00781 [poplar] [flax] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.013G148500.2 pacid=42812094 polypeptide=Potri.013G148500.2.p locus=Potri.013G148500 ID=Potri.013G148500.2.v4.1 annot-version=v4.1 ATGGGCAACTCTCTTCCATCCAAGATCAGCAAAGTAGATACTATTTCTGGAGACAAGCACCATGAACAGAGTAAACGAAGAACTTCATGTTTCACAGCAT ACAAGATGGAGGGTACATTGACGACGGATTCGGTTTCAGATTCGGATTTCCTTAAGGAATTTTATATTCCTAATTACATTTTGGTTCCTGATTCGAAATC CGATTCCACTCCTCCACCTCAGCTACCTCAGTGTCCGGTTCTGGTTTTTATCAATTCCAAAAGTGGTGGTCAGCTTGGTGCAGATCTTTTTAAGACTTAT TCTGCTCTTCTTAATGAAAATCAGGTTTTTGATTTGGGGAAGGAAGCGCCGGATGTGGTGTTGCGGAGGATTTATTTGAATTTGGAGAAATTGAAATCTA ATGATGAATTTGCGGCTAAAATTCAAGAGAAATTGCGAATTATTGTTGCTGGTGGAGATGGAACAGCTGGATGGCTTCTTGGTGTTGTTTGCGATCTTAA ATTATCGCATCCGCTGCCGATTGCTACTATGCCACTGGGGACCGGAAACAATCTTCCGTTCGCGTTTGGTTGGGGAAAGAAGAATCCAGGAACGGATGTT CAGGCTGTGATGGCTTTTATGAAGAAAGTAAAGAATGCCAAGGAAATGAAAATAGACAACTGGCATATTCTCATGAGGATGAGAGCTCCTAAAGAAGGTT CCTGTGATCCCATTGCACCTCTTGAACTACCACATTCTCTGCATGCAGTTCACCGCGTTTCTCCAACAGATGAGCTCAACATGGAAGGTTATATCACATT TCGTGGGGGATTCTGGAACTACTTCAGTATGGGCATGGATGCCCAAGTGTCATATGCATTTCATTCTGAGCGGAAGTTGCATCCTGAAAAATTCAAAAAT CAGTTGATTAATCAGAGTACTTATGCAAAGCTTGGTTGTACACAAGGATGGTTTTTAGCTTCTCTTTATCACCCTTCTTCAAGGAACATAGCGCACCTTG CTACAGTGAAGATCATGAAGAAGACTGGTCAATGGGAAAAGCTTCATATACCTAACAGCATTAGGTCAATTGTATGCCTTAACTTGCCCAGCTTTTCTGG TGGACTAAATCCATGGGGAACACCAAATAGCAACAAACGACGTGACAGAGGCTTGACTCCACCTTTTGTTGATGATGGACTTATCGAGGTTGTTGGTTTT AGAGACGCTTGGCATGGGCTTGTTTTGCTTGCTCCAAATGGACATGGAACTCGTCTTGCACAGGCACACAGAATCCGCTTCGAGTTTCACAAAGGTGGCG CTGACCACACATTCATGAGAATTGACGGGGAACCCTGGAAGCAACCGCTACCATCCGATGATGATAATACTGTGTTGGTGGAAATCTCTCATCTTGGCCA AGTCAACATGCTTGCCACCGATGATTGCAGGTCTAAAAGTGTCAACGATCCTTTATCGCCATCCTGTCATGATGCAGACAAAGACAGTGACGAGGAGGAC TCGGTACTAGCCGAAGAGTTTAGGAAATTTGGCGCAGCTGATACATTCAGGATCCCAGATGAAGTTGACATTTCTCATCTCAGTTAA
AA sequence Show only first row Show all	>Potri.013G148500.2 pacid=42812094 polypeptide=Potri.013G148500.2.p locus=Potri.013G148500 ID=Potri.013G148500.2.v4.1 annot-version=v4.1 MGNSLPSKISKVDTISGDKHHEQSKRRTSCFTAYKMEGTLTTDSVSDSDFLKEFYIPNYILVPDSKSDSTPPPQLPQCPVLVFINSKSGGQLGADLFKTY SALLNENQVFDLGKEAPDVVLRRIYLNLEKLKSNDEFAAKIQEKLRIIVAGGDGTAGWLLGVVCDLKLSHPLPIATMPLGTGNNLPFAFGWGKKNPGTDV QAVMAFMKKVKNAKEMKIDNWHILMRMRAPKEGSCDPIAPLELPHSLHAVHRVSPTDELNMEGYITFRGGFWNYFSMGMDAQVSYAFHSERKLHPEKFKN QLINQSTYAKLGCTQGWFLASLYHPSSRNIAHLATVKIMKKTGQWEKLHIPNSIRSIVCLNLPSFSGGLNPWGTPNSNKRRDRGLTPPFVDDGLIEVVGF RDAWHGLVLLAPNGHGTRLAQAHRIRFEFHKGGADHTFMRIDGEPWKQPLPSDDDNTVLVEISHLGQVNMLATDDCRSKSVNDPLSPSCHDADKDSDEED SVLAEEFRKFGAADTFRIPDEVDISHLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Potri.013G148500 [exp]	0	1
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G007800 [exp]	1.00	0.7748
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	2.00	0.6827
AT5G25770			alpha/beta-Hydrolases superfam...		Potri.006G240600 [exp]	12.48	0.6236
AT2G31335			unknown protein		Potri.019G013000 [exp]	13.30	0.6413
AT2G20562			unknown protein		Potri.011G114600 [exp]	17.17	0.6183
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	19.49	0.5349	Pt-MMT.1,MMT
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.004G184500 [exp]	32.49	0.5829
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.004G161200 [exp]	42.00	0.5360
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.011G134200 [exp]	48.49	0.5436	SUBI.9
AT5G45290			RING/U-box superfamily protein...		Potri.014G053500 [exp]	52.78	0.5401

Compare expression of checked genes

Potri.013G148500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.