Plant FIBer expression Database

Pt-PETC.2 (Potri.013G148900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PETC.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G03280 311 / 3e-108 PGR1, PETC PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
AT5G13430 51 / 1e-07 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
AT5G13440 51 / 1e-07 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G118500
[exp]
404 / 6e-145 AT4G03280 318 / 4e-111 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Potri.003G162200
[exp]
52 / 6e-08 AT5G13430 417 / 8e-149 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Potri.001G067900
[exp]
51 / 1e-07 AT5G13430 413 / 4e-147 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018521
[exp]
342 / 2e-120 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Lus10039739
[exp]
340 / 8e-120 AT4G03280 306 / 1e-106 PROTON GRADIENT REGULATION 1, photosynthetic electron transfer C (.1.2)
Lus10028416
[exp]
51 / 4e-08 AT5G13440 265 / 3e-91 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Lus10035118
[exp]
52 / 7e-08 AT5G13430 379 / 8e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Lus10031982
[exp]
52 / 7e-08 AT5G13430 379 / 4e-134 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Lus10041513
[exp]
52 / 8e-08 AT5G13430 376 / 9e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Lus10041870
[exp]
52 / 8e-08 AT5G13430 378 / 1e-133 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
Lus10012580
[exp]
52 / 1e-07 AT5G13430 373 / 2e-131 Ubiquinol-cytochrome C reductase iron-sulfur subunit (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0516 ISP-domain PF00355 Rieske Rieske [2Fe-2S] domain
Representative CDS sequence
>Potri.013G148900.1 pacid=42811290 polypeptide=Potri.013G148900.1.p locus=Potri.013G148900 ID=Potri.013G148900.1.v4.1 annot-version=v4.1
ATGGCTTCCACTACTCTCTCCCCTGCCACTCCCTCACAGCTATGCTCTAGCAAGAGTGGCATGTTCTCTCCTACACATGCAGCGTTTGTGAAACCAGCAA
GGACAAATATGGTGACAAAAGAGAAAGGAATGAGAATTGCATGTCAGGCTACAAGTATTCCTGCTGATGATGGAGTGCCTGACATGGGTAAGAGGGAGCT
TATGAATCTGCTTCTTTTGGGTGCTCTTTCACTCCCCACTGCTGGCATGTTGATTCCTTATACTTATTTCTTTGTCCCTTCTGGACTAGGAGGTGGTGGT
GGCGGTACCGTTGCCAAGGATGCCCTTGGAAATGATATCGTTGTAGAGCAATGGCTTAAGACTCATGGCCCTGGAGACCGAACCCTTTCTCAAGGATTGA
AGGGAGATCCAACCTACCTTGTTGTTGAGAAAGATAGAACTCTTGCAACATATGGAATTAATGCTGTGTGCACACATCTTGGGTGTGTTGTGCCATGGAA
CCAGGCCGAGAAGAAGTTCATCTGCCCCTGCCACGGATCCCAGTACAATGACCAAGGAAGAGTTGTCCGAGGGCCAGCTCCCCTGTCATTGGCATTGGCT
CACTGCGACGTAGACGACGGCAAGGTGGTCTTTGTTCCATGGGTCGAAACAGATTTCAGAACCGGAGATGATCCATGGTGGACTTAA
AA sequence
>Potri.013G148900.1 pacid=42811290 polypeptide=Potri.013G148900.1.p locus=Potri.013G148900 ID=Potri.013G148900.1.v4.1 annot-version=v4.1
MASTTLSPATPSQLCSSKSGMFSPTHAAFVKPARTNMVTKEKGMRIACQATSIPADDGVPDMGKRELMNLLLLGALSLPTAGMLIPYTYFFVPSGLGGGG
GGTVAKDALGNDIVVEQWLKTHGPGDRTLSQGLKGDPTYLVVEKDRTLATYGINAVCTHLGCVVPWNQAEKKFICPCHGSQYNDQGRVVRGPAPLSLALA
HCDVDDGKVVFVPWVETDFRTGDDPWWT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Potri.013G148900
[exp]
0 1 Pt-PETC.2
AT1G20810 FKBP-like peptidyl-prolyl cis-... Potri.005G254900
[exp]
1.00 0.9845
AT4G26530 Aldolase superfamily protein (... Potri.011G165000
[exp]
2.23 0.9797 Pt-FBA.1
AT3G01440 PnsL3, PQL2, PQ... PsbQ-like 2, Photosynthetic ND... Potri.001G416400
[exp]
3.00 0.9803
AT3G62410 CP12-2 CP12 DOMAIN-CONTAINING PROTEIN... Potri.002G196100
[exp]
3.16 0.9805
AT5G07020 proline-rich family protein (.... Potri.001G032200
[exp]
4.24 0.9705
AT1G51110 Plastid-lipid associated prote... Potri.001G011700
[exp]
6.00 0.9772
AT2G46820 PSI-P, TMP14, P... THYLAKOID MEMBRANE PHOSPHOPROT... Potri.002G180400
[exp]
6.92 0.9801 TMP14.1
AT1G18060 unknown protein Potri.012G052300
[exp]
7.00 0.9784
AT5G63520 unknown protein Potri.011G010200
[exp]
7.48 0.9735
AT4G19985 Acyl-CoA N-acyltransferases (N... Potri.019G065400
[exp]
7.74 0.9701

Potri.013G148900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.