Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23250 176 / 4e-54 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT5G16770 176 / 2e-53 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 172 / 1e-52 MYB ATMYB41 myb domain protein 41 (.1) AT2G31180 170 / 4e-52 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT4G21440 172 / 9e-52 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G38620 167 / 1e-50 MYB AtMYB4 myb domain protein 4 (.1) AT1G06180 166 / 1e-50 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT3G02940 168 / 2e-50 MYB ATMYB107 myb domain protein 107 (.1) AT1G79180 167 / 2e-50 MYB ATMYB63 myb domain protein 63 (.1) AT1G16490 166 / 3e-50 MYB ATMYB58 myb domain protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118700 [exp] 375 / 9e-133 AT5G16770 170 / 4e-51 myb domain protein 9 (.1.2) Potri.019G118800 [exp] 238 / 2e-78 AT1G16490 174 / 2e-53 myb domain protein 58 (.1) Potri.013G149200 [exp] 207 / 1e-66 AT2G31180 193 / 3e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.019G118900 [exp] 197 / 1e-62 AT2G31180 194 / 7e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 187 / 4e-58 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 179 / 3e-55 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 179 / 3e-55 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.011G125900 [exp] 179 / 2e-54 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 174 / 9e-53 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018518 [exp] 191 / 6e-60 AT1G79180 167 / 6e-51 myb domain protein 63 (.1) Lus10039734 [exp] 187 / 5e-59 AT5G65230 183 / 2e-57 myb domain protein 53 (.1) Lus10033738 [exp] 187 / 2e-58 AT4G28110 184 / 2e-57 myb domain protein 41 (.1) Lus10039735 [exp] 186 / 2e-58 AT5G65230 176 / 5e-54 myb domain protein 53 (.1) Lus10033737 [exp] 189 / 3e-58 AT4G21440 168 / 6e-49 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10031607 [exp] 185 / 7e-58 AT4G28110 182 / 2e-56 myb domain protein 41 (.1) Lus10003557 [exp] 178 / 1e-54 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10042561 [exp] 175 / 1e-54 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10022021 [exp] 174 / 2e-54 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10018547 [exp] 174 / 1e-53 AT4G21440 179 / 2e-54 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G149100.1 pacid=42812709 polypeptide=Potri.013G149100.1.p locus=Potri.013G149100 ID=Potri.013G149100.1.v4.1 annot-version=v4.1 ATGGTCAAATCGGCCTCTATTGATAAAAATGGAATCAGGAAAGGTTCATGGAGTATCGAAGAAGATGAAAAGTTGAGAGTTTATATTCAGAAATATGGCC ACTGGAATTGGCGCCAACTTCCCAAGTTTGCTGGTTTATCACGGTGTGGCAAGAGTTGCAGATTACGATGGATGAACTATCTCCGGCCGGACGTAAAGCG AGGAAATTTCTCCGAAGAAGAGGATAATTTGATCATTCAAATGCATGAAGAACTTGGAAATAAATGGTCTATTATTTCTGGGAAATTACCTGGAAGAACA GACAACGAAATTAAAAATCACTGGCATACCAACTTGAGCAAGAGAGTGAAGCAAAACCAACCAGTTTCTTCTGAGGTGATGAATAAAGAGCAGTCAAGTG AATCTTCACAATCTGAAGTTATTCAGACTAAAAAGTCTGAAACTGACAGTGTTTCTGTCAATACTCCCTCTGAATCTGATCATCAACAAAAAAATGTAGA GAACTTTCCTTCATCTCAAGAAATATCTTGCAGTGAGTTCTCCTCCATGAGTAATGATTCTGTGTCAGGCATGAATAGCGTTGCCGAGGATAGTTTCTCT TCAATGGAGATATTTCAAGACTCAGGTTCAGATTTCTGGAACCTGCCATTTTTAGCAGACAACAATTACAACCAAGATGGTTATGAATCATTGTTCTTGA CAGAAGAAGGATACATGTCTTTCTATGCTTCCAACTACGACGATGATGGTACATATTGGATCCAGCAAGTGCTGCAGGAACTGGAAGGCAGTAATTAA
AA sequence Show only first row Show all	>Potri.013G149100.1 pacid=42812709 polypeptide=Potri.013G149100.1.p locus=Potri.013G149100 ID=Potri.013G149100.1.v4.1 annot-version=v4.1 MVKSASIDKNGIRKGSWSIEEDEKLRVYIQKYGHWNWRQLPKFAGLSRCGKSCRLRWMNYLRPDVKRGNFSEEEDNLIIQMHEELGNKWSIISGKLPGRT DNEIKNHWHTNLSKRVKQNQPVSSEVMNKEQSSESSQSEVIQTKKSETDSVSVNTPSESDHQQKNVENFPSSQEISCSEFSSMSNDSVSGMNSVAEDSFS SMEIFQDSGSDFWNLPFLADNNYNQDGYESLFLTEEGYMSFYASNYDDDGTYWIQQVLQELEGSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.013G149100 [exp]	0	1
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	6.32	0.9132
AT5G66580			unknown protein		Potri.018G143700 [exp]	6.48	0.9132
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	10.24	0.9101
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.012G028600 [exp]	13.30	0.8718
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	24.73	0.8902
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.003G194700 [exp]	27.71	0.9071
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.008G026700 [exp]	28.37	0.9061	PtrProT5
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.009G141600 [exp]	33.76	0.8719
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084800 [exp]	36.75	0.8999
					Potri.001G077160 [exp]	36.98	0.8991

Compare expression of checked genes

Potri.013G149100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.