Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23160 56 / 7e-09 unknown protein AT5G08240 54 / 3e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119000 [exp] 339 / 2e-117 AT5G08240 52 / 1e-07 unknown protein Potri.007G071900 [exp] 61 / 1e-10 AT5G08240 92 / 2e-21 unknown protein Potri.005G092400 [exp] 57 / 4e-09 AT5G08240 100 / 9e-25 unknown protein Potri.001G408900 [exp] 53 / 7e-08 AT5G08240 52 / 1e-07 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040984 [exp] 64 / 2e-11 AT5G08240 89 / 2e-20 unknown protein Lus10013437 [exp] 62 / 7e-11 AT5G23160 82 / 5e-18 unknown protein Lus10033739 [exp] 62 / 1e-10 ND 41 / 5e-04 Lus10010194 [exp] 61 / 4e-10 AT5G23160 90 / 3e-20 unknown protein Lus10033740 [exp] 59 / 5e-10 ND / Lus10017395 [exp] 52 / 2e-07 AT5G23160 83 / 6e-19 unknown protein Lus10031606 [exp] 46 / 2e-05 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G149300.1 pacid=42811056 polypeptide=Potri.013G149300.1.p locus=Potri.013G149300 ID=Potri.013G149300.1.v4.1 annot-version=v4.1 ATGTTACAAACAACAGTAATTATGAAGAACGTTTCAAGAAACAAGTTCTTGCTATGTTTTAAGCCAGTTGTTGATATGGATCAGCTAGTACTTAATCACT CCAAAGTTGGTGTTGTTGATCACTCAACAGACAAGTCTTTGAAGCATCTTTCCAGGGACAAGAAGGAAAGGGATCATATGAAGCGTTTGGTCCCAAATTC TTCTTTGCTTTCAGAAGATAATGATACGTGTTCAGCAATAATTTCTTCATCGGAGAATTCATTGATTCTTCATTCTTCAAAGAAAAACTTATCTCGTGTG ATCAAGGCCGTTTTCTTCGAGACCATACTGTCCAAGAGAATTCACGATAGAAAAGGTAATCTATGTCAAGACTCGAATATTGGATCAAAGCCTTCTTCTT CTTCTTCTTCTTCTTCTTCTTCTTCACCACCACCACCACCACCATCAATGGACAGCAAGAAATCTTTGGATGATACAAGTGATCATGACAATACCAACTT GGTCAATAAGGTATTGATCGATACTCATCAAGCTAATGAAGTAACATCTTGTCCAAGTTCGATATCAGAATCAAGAAAATTGTCCAAGATAAAGAACTCA AGAAACCCAAATCAAGAACTTGAATTCAAGGCAAAAACCATGGACAAGTCAGGCATATATCTATTCCTTATTAGTCTTACGGTGACAGTTTTATGGGGTA AGCTATGTGCAATATTTTTCACCATAATCTGGTTGTATTTTCTGCCTCGAAGACAGCACAATACTAGCCGGCCCCAAAATGTTACAAGAAGCTTGTGGTT GCCAGAGAAAGAAGAGAGCAAAGATCAGTACTCCTACAAGAAGAAGGTCATAATGGAAGGGCTGCTTGAAAGGAACCATCAGAGGGTTAACGGCATTAAA TTCTTGACGTGA
AA sequence Show only first row Show all	>Potri.013G149300.1 pacid=42811056 polypeptide=Potri.013G149300.1.p locus=Potri.013G149300 ID=Potri.013G149300.1.v4.1 annot-version=v4.1 MLQTTVIMKNVSRNKFLLCFKPVVDMDQLVLNHSKVGVVDHSTDKSLKHLSRDKKERDHMKRLVPNSSLLSEDNDTCSAIISSSENSLILHSSKKNLSRV IKAVFFETILSKRIHDRKGNLCQDSNIGSKPSSSSSSSSSSSPPPPPPSMDSKKSLDDTSDHDNTNLVNKVLIDTHQANEVTSCPSSISESRKLSKIKNS RNPNQELEFKAKTMDKSGIYLFLISLTVTVLWGKLCAIFFTIIWLYFLPRRQHNTSRPQNVTRSLWLPEKEESKDQYSYKKKVIMEGLLERNHQRVNGIK FLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23160			unknown protein		Potri.013G149300 [exp]	0	1
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.011G054300 [exp]	3.16	0.9107
AT4G23050			PAS domain-containing protein ...		Potri.003G122700 [exp]	5.19	0.8823
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	6.92	0.8885
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.005G234500 [exp]	7.74	0.8934	Pt-COL6.1
AT5G19875			unknown protein		Potri.001G009200 [exp]	9.48	0.8864
AT5G50710			unknown protein		Potri.012G101800 [exp]	9.79	0.8859
AT1G25530			Transmembrane amino acid trans...		Potri.008G118000 [exp]	10.24	0.8894
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.007G054200 [exp]	13.34	0.8189	Pt-HLS1.2
					Potri.014G030500 [exp]	20.71	0.8460
AT3G24330			O-Glycosyl hydrolases family 1...		Potri.018G072300 [exp]	21.90	0.8633

Compare expression of checked genes

Potri.013G149300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.