Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 836 / 0 S-locus lectin protein kinase family protein (.1) AT4G00340 508 / 2e-168 RLK4 receptor-like protein kinase 4 (.1) AT4G11900 452 / 1e-146 S-locus lectin protein kinase family protein (.1) AT1G65790 408 / 8e-130 ARK1 receptor kinase 1 (.1) AT1G11350 408 / 8e-130 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G61390 401 / 3e-127 S-locus lectin protein kinase family protein (.1.2) AT1G61490 397 / 4e-126 S-locus lectin protein kinase family protein (.1) AT1G65800 397 / 2e-125 ARK2 receptor kinase 2 (.1) AT1G11300 408 / 9e-124 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 392 / 1e-123 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G121000 [exp] 1377 / 0 AT2G19130 863 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119200 [exp] 1237 / 0 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.014G086900 [exp] 550 / 0 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.005G014700 [exp] 532 / 2e-177 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 530 / 8e-177 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 462 / 5e-151 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 457 / 1e-148 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 456 / 3e-148 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 452 / 1e-146 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042266 [exp] 838 / 0 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 803 / 0 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10029802 [exp] 686 / 0 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039732 [exp] 640 / 0 AT2G19130 647 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039762 [exp] 632 / 0 AT2G19130 621 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 619 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039733 [exp] 608 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033748 [exp] 588 / 0 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039767 [exp] 528 / 1e-175 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039731 [exp] 545 / 4e-174 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G149500.1 pacid=42812759 polypeptide=Potri.013G149500.1.p locus=Potri.013G149500 ID=Potri.013G149500.1.v4.1 annot-version=v4.1 ATGGATGTCCGAAACAATCCATGGATCATGTTCTTTGTTATCTTTTTTTGTTTTCCTCTCAACTCCCATGTCTCCCTTGGAGCTGATACAATCTCTGCAA ACAGTTCTCTCTCTGGAGACCAAACTATTGTCTCAGCACGAAAAGTCTTTGAACTTGGTTTCTTCCGTCCAGGTAACTCCCCAAACTACTATATAGGCAT GTGGTACTATAGAGATAAAGTGTCTGAACAGACCATAGTTTGGGTAGCAAACAGAGAGACACCCGTTTCTGATAGATTTTCTTCAGAGTTAAAGGTTTCT GGTGGTAATTTATTTCTCTTTAATGAGTCCAAGATCCCAATTTGGTCCACAAATTTGAGCTCTAGTAGGTCAAGTTCTGTGGAAGCAGTTCTTGGTGATG ATGGAAATCTTGTTTTGAGAGATGGGTCTAATTCAGTGTCACCACTATGGCAGTCTTTTGATTTTCCAGCTCATACATGGCTGCCTGGTGCCAAGGTTGG ATTGAACAAAATCACCGGAAGGAACACACTTCTCATTTCATGGAAAAGCAAAGATGATCCTTCACCAGGTCTTTTCTCTCTTGAGCTAGACCCAAATCAG AGTCGATATTTGATCTTTAGGAATAGGACTAAATACTATTGGGATAGTGGATCATGGAATGGACAGATTTTCAGCTTAGTTCCTGAAATGAGATCCAACT ATATTTACAACTTTAGTTATGTTAACGATGCTAATGAGAGCTATTTCACCTATTCATTGTACAATGAAACACTCATATCTCGGTTTGTGATGGCGGCTGG AGGACAGATTCAGCAACTATCATGGTTGGAGATTAGCCAAGCATGGTTTTTGTTCTGGTCTCAACCAAAGACGCAATGTGAGGTTTATGCTTACTGCGGG GCTTTTGGAAGCTGTAATGAGAATTCACAGCCTTTCTGCAACTGCTTGAGAGGTTTCAACCCGAAAAAATGGGAGGACTGGAAGTCGGAGGTTTTTTCTG GTGGATGTGAGAGGGAATCAAATCTGCAGTGTGGGAATTCTAGTGTTGTTAATGGGAAGAGTGACAGATTTTTCTCGAGTAACAATATGAAGTTGCCTGC AAATCCACAGACAGTGGCAGCCAGGAGTGCACAGGAATGCGAATCCACTTGCTTGAGCAACTGCACTTGTACTGCCTATGCTTATGATGGCAGTCTGTGC TCAGTTTGGTTCGGCGATCTTTTGGATATGCAACAACTTGCAGATGACTCAAATGGAAACACTATCTATATCAGGCTTGCAGCATCTGAGTTTTCAAGTT CGAAGAATGATAAGGGGATAGTTATTGGTGGTGTTGTGGGCTCAGTGGTGATAGTGTCTCTCTTTGGCCTTGTTCTGTTTGTATTTTTGAGGAGGAGGAA AACAGTCAAAACGGGGAAAGCAGTAGAAGGTTCACTGATAGCTTTTGCGTACAGAGATCTACAGAATGCGACAAAGAATTTCTCAGAGAAATTGGGAGGA GGAGGTTTTGGTTCTGTTTTCAAAGGGGTGTTGCCTGATACGAGTGTCATAGCTGTGAAGAAGCTCGAAAGCATCATCCAAGGAGAGAAGCAATTCCGCT CAGAAGTGAGCACAATCGGGACAATCCAGCACGTCAATCTTGTTCGCCTTCGTGGGTTCTGCTCGGAGGGTAATAAGAAGCTGTTGGTCTATGACTACAT GCCGAATGGTTCTCTTGATTCCCATCTTTTCTCGGAGGACTCAAAAAAGGTCTTAGACTGGAAAACTCGGTACGGTATTGCTTTGGGGACAGCTAGAGGA TTAAATTATCTCCATGAGAAATGCAGGGATTGTATCATACACTGCGATATAAAGCCTGAGAACATCCTTTTAGATGCTCAGTTTTTCCCTAAAGTGGCAG ATTTTGGCCTGGCGAAGCTTGTCGGCCGGGATTTTAGCAGGGTGCTAACAACCATGAGAGGGACAAGAGGTTATCTTGCACCAGAGTGGATTTCAGGTGT GCCTATAACTGCCAAAGCAGACGTTTACAGTTATGGAATGATGCTTTTTGAAGTTGTATCAGGAAGGAGAAACTCTGAGCAATCTGAAGATGGAAAAGTG AAGTTCTTCCCAAGTTATGCTGCAAGCCAAATCAATCAAGAGCATGGTGAAATCCTTAGCCTATTGGACCACAGGTTGGAGGGGAATGCTGATCTTGAAG AGCTAACAAGAATCTGTAAAATTGCTTGCTGGTGCATCCAAGATGATGAAGCCCACAGGCCATCAACGGGTCAGGTAGTTCAGGTCCTCGAAGGGGTTGT GAACGTGAACCCACCTCCGGTTCCAAGATCTCTCCAAGTGTTTGTTGACAACCAGGAGAGCATAATTTTCTTCACAGAGTCATCCTCTAGCCAAAGTTCA CAGGCACAGAGCCACACCTCCACTGCTTCTTCTCAGACCAAGAGCCCCACGTCAAACACAAGTTCCAAGTCTTAA
AA sequence Show only first row Show all	>Potri.013G149500.1 pacid=42812759 polypeptide=Potri.013G149500.1.p locus=Potri.013G149500 ID=Potri.013G149500.1.v4.1 annot-version=v4.1 MDVRNNPWIMFFVIFFCFPLNSHVSLGADTISANSSLSGDQTIVSARKVFELGFFRPGNSPNYYIGMWYYRDKVSEQTIVWVANRETPVSDRFSSELKVS GGNLFLFNESKIPIWSTNLSSSRSSSVEAVLGDDGNLVLRDGSNSVSPLWQSFDFPAHTWLPGAKVGLNKITGRNTLLISWKSKDDPSPGLFSLELDPNQ SRYLIFRNRTKYYWDSGSWNGQIFSLVPEMRSNYIYNFSYVNDANESYFTYSLYNETLISRFVMAAGGQIQQLSWLEISQAWFLFWSQPKTQCEVYAYCG AFGSCNENSQPFCNCLRGFNPKKWEDWKSEVFSGGCERESNLQCGNSSVVNGKSDRFFSSNNMKLPANPQTVAARSAQECESTCLSNCTCTAYAYDGSLC SVWFGDLLDMQQLADDSNGNTIYIRLAASEFSSSKNDKGIVIGGVVGSVVIVSLFGLVLFVFLRRRKTVKTGKAVEGSLIAFAYRDLQNATKNFSEKLGG GGFGSVFKGVLPDTSVIAVKKLESIIQGEKQFRSEVSTIGTIQHVNLVRLRGFCSEGNKKLLVYDYMPNGSLDSHLFSEDSKKVLDWKTRYGIALGTARG LNYLHEKCRDCIIHCDIKPENILLDAQFFPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVPITAKADVYSYGMMLFEVVSGRRNSEQSEDGKV KFFPSYAASQINQEHGEILSLLDHRLEGNADLEELTRICKIACWCIQDDEAHRPSTGQVVQVLEGVVNVNPPPVPRSLQVFVDNQESIIFFTESSSSQSS QAQSHTSTASSQTKSPTSNTSSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	0	1
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	1.00	0.9563
AT5G48370			Thioesterase/thiol ester dehyd...		Potri.014G174800 [exp]	4.47	0.9270
AT3G53810			Concanavalin A-like lectin pro...		Potri.006G088801 [exp]	5.19	0.9300
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140600 [exp]	5.47	0.9133
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	6.00	0.9225
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G284305 [exp]	7.34	0.9197
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221500 [exp]	7.74	0.9190
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.008G024100 [exp]	9.27	0.8883
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211932 [exp]	9.79	0.9099
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221700 [exp]	10.19	0.9152

Compare expression of checked genes

Potri.013G149500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.