Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03230 1206 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 414 / 1e-129 S-locus lectin protein kinase family protein (.1.2) AT4G23180 402 / 1e-127 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 397 / 1e-125 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G21390 402 / 3e-125 B120 S-locus lectin protein kinase family protein (.1) AT4G23230 390 / 9e-125 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G27290 394 / 4e-123 S-locus lectin protein kinase family protein (.1) AT4G27300 394 / 1e-122 S-locus lectin protein kinase family protein (.1) AT1G11340 395 / 3e-122 S-locus lectin protein kinase family protein (.1) AT4G21380 394 / 3e-122 ARK3 receptor kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G119900 [exp] 1081 / 0 AT4G03230 974 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119700 [exp] 1079 / 0 AT4G03230 1025 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119600 [exp] 1070 / 0 AT4G03230 983 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120000 [exp] 1026 / 0 AT4G03230 967 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014802 [exp] 428 / 1e-139 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.011G125050 [exp] 439 / 2e-139 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 439 / 2e-139 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125351 [exp] 436 / 2e-138 AT4G27290 748 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125151 [exp] 434 / 1e-137 AT4G27290 757 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031591 [exp] 845 / 0 AT4G03230 853 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018512 [exp] 837 / 0 AT4G03230 823 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 499 / 8e-169 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10039725 [exp] 470 / 3e-153 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 431 / 2e-136 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 429 / 1e-134 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 419 / 1e-131 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 419 / 2e-131 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020083 [exp] 403 / 4e-131 AT4G21390 427 / 6e-143 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 408 / 4e-130 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.013G150800.1 pacid=42810991 polypeptide=Potri.013G150800.1.p locus=Potri.013G150800 ID=Potri.013G150800.1.v4.1 annot-version=v4.1 ATGCTACCTCCTACCTTCTTTCTGTATGTGTTTTTGTTCTGTTCTTTGCTTCTGCATTGCTTGGCAGGAGATACCTTAACAAGAAACAGTCCTATTAGAG ACAGTAGAGGAGAAACTCTTGTTTCTAATGGAGAAAAATTTGAACTTGGTTTCTTTACTCCTAATGGAAGCACTGAAAGAAGATATGTTGGCATTTGGTT TTACAAGTCTAGTCCACGCACGGTTGTGTGGGTTGCAAATAGAGACAATCCACTTTTAGATCACAGTGGAGTCTTCTCTGTTGACGAGAATGGAAACCTT CAGATACTGGACGGGAGGGGGAGATCTTTCTGGTCAATAAATCTTGAAAAACCATCCTCTATGAACAGGATAGCCAAGCTAATGGACACTGGTAACCTGG TCGTCAGCGATGAAGATGATGAGAAGCACTTGACAGGAATTCTGTGGCAGAGTTTTGAAAATCCAACTGAAACATTTCTTCCAGGGATGAAATTGGATGA AGATATGGCACTCATTTCATGGAAAAGTTATGATGACCCAGCATCTGGAAACTTCAGTTTTCATCTAGATCGAGAAGCAAACCAGTTTGTCATTTGGAAA AGATCCATTAGGTACTGGAGAAGTGGAGTTTCGGATAATGGTGGCAGCTCCAGAAGTGAAATGCCTTCTGCAATATCTTACTTCCTGTCAAATTTCACCT CGACTTCAGTCCGCAATGATTCTGTTCCGTATATCACTTCATCTTTGTACACAAATACAAGAATGGTGATGAGTTTTGCTGGCCAAATTCAGTACCTGCA GTTGAATACTGAGAAGACTTGGTCCGTGATTTGGGCCCAGCCTAGGACTAGATGCAGTCTCTATAATGCTTGTGGTAATTTTGGTAGCTGCAATAGTAAT AATGAAGTGGTATGTAAATGTTTGCCTGGTTTTCAGCCTGTCTCACCGGAGTACTGGAATTCTGGAGATAATTCAAGAGGATGCACCAGAAGATCACCAT TATGCAGCAACAGTGCTACAAGTGACACATTTTTGAGCTTAAAGATGATGAAAGTAGCAAATCCGGATGCACAATTCAAGGCTAACAGTGAGGTGGAATG TAAAATGGAGTGCCTCAACAACTGCCAATGTGAGGCTTTCTCATATGAAGAAGCTGAAACCACTAAAGGGGGTGAATCTGAAAGTGCCACCTGCTGGATT TGGACTGATGATCTCAGGGACATTCAAGAGGAGTATGATGGTGGCCGTGATCTCCATGTACGCGTATCAGTCTCTGATATAGAATCAGCAGCAACAACTT GTGGGACTTGTGGAACTAACATGATTCCCTATCCCCTTAGCACTGGACCAAAATGTGGTGATCCCGCATACCTTAATTTCTACTGCAACCTCTCATCAGG CCAGCTTAACTTTAAGGCAAGAGGCGACACCTACAGAGTCACAAAAATCAATCCAGGAATGCACACATTTGTCATCCAAACTGAAACTGCAGATAGTTGC AAGTCCATAAAATCAAATGGAAATCTCTTACAGCTCAATCAATCATCTCCATTTCATGTGATTAGATTTTGCAATGTTGATCTGGGTAACATTAGTTCAA CTATTTCTTTCACGGGTGGAGACGAGGTTGAGATAGGTTGGGATCCGCCACCTGAGCCAACTTGTTTTTCTTCTTCAGACTGCAAATATTGGCCAAATTC AAGTTGCAGTGCAAGAATAGATGGAAAGAAATTGTGCCTTTGTAATGCAAAGTTTAAATGGGATGGTTTGAAGTTGAAATGTACTGAAGCAGGTCATTAC AGTGAGAAAAAAGATGGTTCTTCAATAGGAAAGATTCCATTGTCTCTGATCATTGCAGTAGCTTTGATTAGTCTCATTGCTTTAGCTGTTCTCTCAAGCA CCATTGTTTTCATATGTTTGCAGAGAAGAAGGATGCCGAAGCTACGAGAAAACAAGGGAATTTTTCCAAGAAATTTAGGATTTCACTTCAATGGTAGCGA GAGACTTGTCAAAGACTTAATTGACTCAGATCGGTTCAATGAAGATGAGACGAAGGCTATAGATGTGCCATGTTTTGACTTGGAAAGCCTATTAGCTGCT ACAGATAACTTCTCAAATGCAAACAAGCTAGGACAAGGTGGCTTCGGGCCTGTCTACAAGGCTACATTTCCAGGTGGAGAAAAAATTGCTGTCAAGAGGC TATCAAGTGGTTCTGGTCAAGGATTAGAAGAATTCAAAAATGAGGTTGTCCTGATTGCCAAGCTACAACACAGGAATCTTGTGAGGCTTCTGGGCTATTG TGTTGAAGGAGATGAAAAGATGTTACTGTATGAGTATATGCCGAACAAAAGCTTAGACTCATTCTTATTTGATCGAAAGCTGTGTGTGTCACTGGACTGG GAGATGCGCTATAACGTCATCATTGGAATTGCTCGAGGGCTTCTTTATCTTCACCAGGATTCCAGGTTGAGAATCATTCATAGAGACTTGAAATCAAGCA ACATTCTGCTGGATGAAGAAATGAACCCCAAGATTTCCGACTTTGGCTTGGCAAGAATTTTTGGAGGCAACGAAACTGCCGCAAACACGAACAGAGTTGT TGGAACCTATGGTTACATTGCTCCTGAGTATGCATTAGATGGCCTTTTTTCTTTCAAATCAGATGTGTTCAGTTTTGGCGTTGTTGTGCTTGAGATTGTC AGTGGAAAAAGGAACACAGGATGCTATCATCCAGAACAATCTTTAAGCCTTCTAGGCCATGCCTGGAATCTTTGGAAAGAAGACAAGGCAATGGAGTTGT TGGATCAGACATTAAGCAAAACATGCAACACAGATCAATTTGTGAAGTGTGTAAATGTTGGGCTATTATGTGTGCAAGAAGACCCTAGTGATCGCCCCAC AGTATCCAACATACTTTTCATGCTTCGAAGTGAAACTCCTACTCTTCCAGATCCTAAGCAACCTGCATTTGTCTTTAGGCGATGCCCTTCTAGCAGAGCT TCTTCATCTAGTAAACCAGACACAGTTTCCAATAATGGGTTAACAGTCACCCTAGAAGATGGCAGATAG
AA sequence Show only first row Show all	>Potri.013G150800.1 pacid=42810991 polypeptide=Potri.013G150800.1.p locus=Potri.013G150800 ID=Potri.013G150800.1.v4.1 annot-version=v4.1 MLPPTFFLYVFLFCSLLLHCLAGDTLTRNSPIRDSRGETLVSNGEKFELGFFTPNGSTERRYVGIWFYKSSPRTVVWVANRDNPLLDHSGVFSVDENGNL QILDGRGRSFWSINLEKPSSMNRIAKLMDTGNLVVSDEDDEKHLTGILWQSFENPTETFLPGMKLDEDMALISWKSYDDPASGNFSFHLDREANQFVIWK RSIRYWRSGVSDNGGSSRSEMPSAISYFLSNFTSTSVRNDSVPYITSSLYTNTRMVMSFAGQIQYLQLNTEKTWSVIWAQPRTRCSLYNACGNFGSCNSN NEVVCKCLPGFQPVSPEYWNSGDNSRGCTRRSPLCSNSATSDTFLSLKMMKVANPDAQFKANSEVECKMECLNNCQCEAFSYEEAETTKGGESESATCWI WTDDLRDIQEEYDGGRDLHVRVSVSDIESAATTCGTCGTNMIPYPLSTGPKCGDPAYLNFYCNLSSGQLNFKARGDTYRVTKINPGMHTFVIQTETADSC KSIKSNGNLLQLNQSSPFHVIRFCNVDLGNISSTISFTGGDEVEIGWDPPPEPTCFSSSDCKYWPNSSCSARIDGKKLCLCNAKFKWDGLKLKCTEAGHY SEKKDGSSIGKIPLSLIIAVALISLIALAVLSSTIVFICLQRRRMPKLRENKGIFPRNLGFHFNGSERLVKDLIDSDRFNEDETKAIDVPCFDLESLLAA TDNFSNANKLGQGGFGPVYKATFPGGEKIAVKRLSSGSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDSFLFDRKLCVSLDW EMRYNVIIGIARGLLYLHQDSRLRIIHRDLKSSNILLDEEMNPKISDFGLARIFGGNETAANTNRVVGTYGYIAPEYALDGLFSFKSDVFSFGVVVLEIV SGKRNTGCYHPEQSLSLLGHAWNLWKEDKAMELLDQTLSKTCNTDQFVKCVNVGLLCVQEDPSDRPTVSNILFMLRSETPTLPDPKQPAFVFRRCPSSRA SSSSKPDTVSNNGLTVTLEDGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03230			S-locus lectin protein kinase ...		Potri.013G150800 [exp]	0	1
AT1G03700			Uncharacterised protein family...		Potri.019G100300 [exp]	1.73	0.9769
AT5G54000			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121800 [exp]	2.44	0.9629
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Potri.014G113100 [exp]	3.74	0.9669
AT4G35160			O-methyltransferase family pro...		Potri.004G050500 [exp]	5.65	0.9473	FOMT1,OOMT2.17
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159200 [exp]	6.70	0.9453
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.014G175000 [exp]	6.92	0.9496	Pt-ZOG1.11
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.007G024400 [exp]	7.21	0.9553
AT2G44290			Bifunctional inhibitor/lipid-t...		Potri.006G195700 [exp]	7.41	0.9534
AT5G41380			CCT motif family protein (.1)		Potri.001G101200 [exp]	7.74	0.9419
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.014G113400 [exp]	10.39	0.9335

Compare expression of checked genes

Potri.013G150800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.