Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 635 / 0 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 630 / 0 ARK3 receptor kinase 3 (.1) AT1G11330 621 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61610 611 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 602 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 586 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 585 / 0 ARK2 receptor kinase 2 (.1) AT1G11410 573 / 0 S-locus lectin protein kinase family protein (.1) AT1G11350 571 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11300 564 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120300 [exp] 1229 / 0 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.004G028701 [exp] 663 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027400 [exp] 662 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 655 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G028600 [exp] 648 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035600 [exp] 647 / 0 AT4G21380 711 / 0.0 receptor kinase 3 (.1) Potri.004G028466 [exp] 646 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039000 [exp] 644 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 643 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028782 [exp] 653 / 0 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039731 [exp] 640 / 0 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039767 [exp] 638 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 637 / 0 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018516 [exp] 635 / 0 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 627 / 0 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10033741 [exp] 627 / 0 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 619 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 619 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 618 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.013G150900.2 pacid=42812060 polypeptide=Potri.013G150900.2.p locus=Potri.013G150900 ID=Potri.013G150900.2.v4.1 annot-version=v4.1 ATGATGTGGTTGTGTGTTCTGTTGCTCTTTTTGTCAATCTCATCTTCTCTATTGCCATTCTGTGCAAGTCAAGGCATTATAGCTCCAGGAAAATACATCA GTGCAAACCAACCCATAATTTCTGCTAGTGGAACTTTTGCATTAGGTTTCTTCAGTATGAGAAATTCAACTCCAAGGTACTATCTTGGCATTTGGTATAA CAAAATTCAGAAGAAAACTATTGTCTGGGTGGCCAATAGAGAATCCCCAACTGATTCTCTAGGAACTTTTGCACTCGGGGTTGATGGAAATCTTGTGGTT TTGGATGCAACAAAGAAGACTGTTTGGTCATCAAATGTAAAGGTTGCTGATTCTGCTATAAATAACACAACGGGTATGCTGATGGATAATGGAAACCTTG TTTTGAGAAGTGATGAAGCCGTCTTGTGGCAGAGCTTTGATCACCCCTCTGATACATTCTTGCCTGGCATGAAACTTGGCTATAATCGCAAAACTAATCA GAGAAGGCAGCTTACTTCTTGGACAGATGCTGAAGATCCACAACCAGGAATGTTCTCTTTCGGGATAGGCACGACTGGAGGTCCACAGTTTTTAATCTGG AAGGATAATGATCCTTATAGCCGAAGTGATGTCTACAGCAATTCTGTGTCATTTGCGAAGTTATCCAAGATGCGACCATTTGCTTATTACCTTACTTTAA ACTTAAAAGGTGATGACATTTATGTCACTTACAGTGCCTCAGAAAACTCGGCGATATTAAGGGTCACGCTAGTCCCAGAAGGGCGAATTGAGTTGTTTCT ATGGCAGGAGATAAACAATGATTGGATTTCTATTTGGCAGTGGCCTTCTACTTACTGTGAATTCTATGCTCAGTGCAGTCCATTTAGTAGCTGTGATCCA AAAGGGTCTCAGGATCGTTGCAAATGTCTGCCAGGCTTCCAGCCAAAAGTTCAGCAAGAGTGGGATATGAGGAATTGGACTGGTGGCACCTGTGTGAGGC AAAAGGCATTGAGATGTGACAAGGATGATGGGTTCTTAAAGTTGGTAAATATGAAATTACCAGATCATTCATATATATTGGGAAATATGAGTACCAATGA TTGTGAATCCAGATGCCTACGGAACTGCTCTTGCACAGCTTATGCATATTTAAACGCGAGTGATGGAACTTCAGGGAAATGCCTGAACTGGTATGGGGAT TTGATGGATCTTGCACAGGATTTTGTTGGATCAGATCTTTACATTCGTCTTCATGACCGAGACCAGGTTGGAAATGTTAAAAGTAGTGTTAAATTTACAC GTAAAAACAAGCGCTCGATTATAATTGCAGTAGCTGCAGTTTCTATAGGGCTTCTTTGTGTTCTATCTGGCTATTTCATCTGGAGAAAAAGCATTGGAAA ACAAGAGAGACTTGAAGAGACTTGTACTGGTATGAACACCAGCATTGAACTCGGAAAGAGTGAGACAGAGCTGAACATATTTAGCTTTAACCAAATAGTG GCTGTCACTAATGACTTCTGTGAAGAAAATAAACTGGGAGAAGGAGGTTTTGGCCCTGTTTATAAGGGGAACTTGATGAATCAAGAAGTAGCTATAAAAA GGCTTTCAAAGAAATCTGAACAAGGGATTGAAGAGTTCATGAATGAGTTAAAACTTATTGCAAAGCTTCAGCACACTAATCTTGTGAGGCTCTTAGGTTG TTGTGTTGAAGGGGAGGAAAAAATGTTGGTCTACGAATACCTGCCGAATCGAAGCCTGGACAAGTTTTTGTTTGATCCATATGAAAAGGCAAATCTTGAT TGGAGCAAACGTTTTCGGATCATCGAGGGCATTGCTCAAGGTCTGCTTTACATCCACAAGTACTCTAGATTGAAAGTGATCCATAGGGACCTAAAGGCAA GTAATATATTACTGGATGAAGCAATGAATCCTAAGATTTCAGATTTCGGAATGGCAAGAATGTTTGGTTCAGATCAAACCGAAGCTGATACCAAGCGGGT GGTCGGTACCTACGGCTACATATCACCTGAATATGCACTGTATGGAAAATTCTCAGAAAAATCAGATGTCTTCAGCTTTGGAGTTCTTTTATTAGAGCTT GTGACCGGCAAGAGAAATATCGAATTTTTTGGTGCCGAGCTCCCTCTAACCCTTCAAGGATGGGCATGGGAATTGTGGAATGATGATAGAGGACTAGACC TTATCGATCCGTCGATAAGGGACACATCTGAATGTCCTGAAAGAGCTCTCAAGTGCATCCATGTAGGGCTTTTGTGTGTTCAGGAATCTCCAGTTGATAG ACCAACAATGCCATTAGTCGTTCTGATGCTGGGCAATGACAACGCATCACTTCCTTCTCCAGAAGAACCTGCATTTTCTAGTATTAAGCGTAGGAAATCT AGCAATGTTGTTTCTTCTTCTTCTTCTGATCACAACACTTTAAGTAGTTACTCTAACAATGAGTTGACAATTACCCTGCCAGAGGCTCGATAG
AA sequence Show only first row Show all	>Potri.013G150900.2 pacid=42812060 polypeptide=Potri.013G150900.2.p locus=Potri.013G150900 ID=Potri.013G150900.2.v4.1 annot-version=v4.1 MMWLCVLLLFLSISSSLLPFCASQGIIAPGKYISANQPIISASGTFALGFFSMRNSTPRYYLGIWYNKIQKKTIVWVANRESPTDSLGTFALGVDGNLVV LDATKKTVWSSNVKVADSAINNTTGMLMDNGNLVLRSDEAVLWQSFDHPSDTFLPGMKLGYNRKTNQRRQLTSWTDAEDPQPGMFSFGIGTTGGPQFLIW KDNDPYSRSDVYSNSVSFAKLSKMRPFAYYLTLNLKGDDIYVTYSASENSAILRVTLVPEGRIELFLWQEINNDWISIWQWPSTYCEFYAQCSPFSSCDP KGSQDRCKCLPGFQPKVQQEWDMRNWTGGTCVRQKALRCDKDDGFLKLVNMKLPDHSYILGNMSTNDCESRCLRNCSCTAYAYLNASDGTSGKCLNWYGD LMDLAQDFVGSDLYIRLHDRDQVGNVKSSVKFTRKNKRSIIIAVAAVSIGLLCVLSGYFIWRKSIGKQERLEETCTGMNTSIELGKSETELNIFSFNQIV AVTNDFCEENKLGEGGFGPVYKGNLMNQEVAIKRLSKKSEQGIEEFMNELKLIAKLQHTNLVRLLGCCVEGEEKMLVYEYLPNRSLDKFLFDPYEKANLD WSKRFRIIEGIAQGLLYIHKYSRLKVIHRDLKASNILLDEAMNPKISDFGMARMFGSDQTEADTKRVVGTYGYISPEYALYGKFSEKSDVFSFGVLLLEL VTGKRNIEFFGAELPLTLQGWAWELWNDDRGLDLIDPSIRDTSECPERALKCIHVGLLCVQESPVDRPTMPLVVLMLGNDNASLPSPEEPAFSSIKRRKS SNVVSSSSSDHNTLSSYSNNELTITLPEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.013G150900 [exp]	0	1
AT5G46060			Protein of unknown function, D...		Potri.011G059400 [exp]	15.42	0.6984
AT5G53750			CBS domain-containing protein ...		Potri.001G402900 [exp]	38.15	0.5999
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	48.37	0.6001	Pt-GLT1.3
AT4G37360		CYP81D2	"cytochrome P450, family 81, s...		Potri.014G021800 [exp]	48.66	0.6126
AT3G15430			Regulator of chromosome conden...		Potri.001G402800 [exp]	77.42	0.6071
					Potri.008G125400 [exp]	109.94	0.5581
AT1G67480			Galactose oxidase/kelch repeat...		Potri.013G104300 [exp]	132.23	0.5513
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	149.01	0.5737
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.004G223300 [exp]	179.58	0.5647
					Potri.002G172050 [exp]	205.33	0.5525

Compare expression of checked genes

Potri.013G150900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.