Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54490 147 / 8e-47 PBP1 pinoid-binding protein 1 (.1) AT4G27280 145 / 4e-46 Calcium-binding EF-hand family protein (.1) AT2G46600 133 / 3e-41 Calcium-binding EF-hand family protein (.1) AT2G27030 50 / 7e-09 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3) AT3G56800 49 / 2e-08 ACAM-3, CAM3 calmodulin 3 (.1) AT2G41110 49 / 2e-08 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT5G37780 49 / 2e-08 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT1G66410 49 / 2e-08 ACAM-4, CAM4 calmodulin 4 (.1.2) AT3G50360 49 / 3e-08 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1) AT5G21274 49 / 3e-08 ACAM-6, CAM6 calmodulin 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G120600 [exp] 196 / 3e-66 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 160 / 2e-52 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.001G412077 [exp] 160 / 4e-52 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.011G039500 [exp] 143 / 2e-45 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 143 / 2e-45 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G125300 [exp] 139 / 4e-44 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1) Potri.004G027200 [exp] 139 / 5e-44 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.014G101700 [exp] 135 / 4e-42 AT2G46600 181 / 3e-60 Calcium-binding EF-hand family protein (.1) Potri.001G414600 [exp] 134 / 5e-42 AT5G54490 118 / 1e-35 pinoid-binding protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018511 [exp] 176 / 1e-58 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10039724 [exp] 174 / 6e-58 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 167 / 8e-55 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 167 / 9e-55 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 137 / 3e-43 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10030227 [exp] 130 / 2e-40 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10005985 [exp] 130 / 2e-40 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10019349 [exp] 52 / 1e-08 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1) Lus10041179 [exp] 48 / 4e-08 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 49 / 5e-08 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.013G151000.1 pacid=42812350 polypeptide=Potri.013G151000.1.p locus=Potri.013G151000 ID=Potri.013G151000.1.v4.1 annot-version=v4.1 ATGGCAGGAGTTGAGAAAAGAGCAGATTTTGAAGACTTGTTGCCTGTAATGGCAAACAAGCTAGGTGGGGAAGGTTTGATAAACGAGCTGTGTAATGGGT TTCAGCTGTTGATGGATAAAGATAGAGGGGTCATTACTATGGAGAGTTTGAGAAGAAATTCGTCTTTCTTGGGCTTGCAAGATTTGAGTGATGATGAGCT TGCTAGTATGGTTAAAGAAGGTGATCTTGATGGTGATGGGGCCTTAAATCAAATGGAGTTTTGTGTTTTGATGTTTAGATTGAGTCCTGAGTTGATGCAA GAATCAAGATTCTGGCTTGAAGAAGCATTTGAGGAGGAGCTCAAGAGTGATGGGCTTTGA
AA sequence Show only first row Show all	>Potri.013G151000.1 pacid=42812350 polypeptide=Potri.013G151000.1.p locus=Potri.013G151000 ID=Potri.013G151000.1.v4.1 annot-version=v4.1 MAGVEKRADFEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLRRNSSFLGLQDLSDDELASMVKEGDLDGDGALNQMEFCVLMFRLSPELMQ ESRFWLEEAFEEELKSDGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.013G151000 [exp]	0	1
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.012G134000 [exp]	1.00	0.9577
AT5G11070			unknown protein		Potri.006G259200 [exp]	2.00	0.9311
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G095200 [exp]	3.74	0.9370	EXT.7
AT5G42380		CML39, CML37	CALMODULIN LIKE 39, calmodulin...		Potri.002G001400 [exp]	3.74	0.9248
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G095100 [exp]	4.24	0.9349	EXT.8
AT2G27080			Late embryogenesis abundant (L...		Potri.009G158900 [exp]	4.47	0.9256
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.001G409500 [exp]	4.89	0.9208
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.012G134100 [exp]	5.29	0.8944
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Potri.006G204300 [exp]	6.48	0.9255	B13.1
AT1G27200			Domain of unknown function (DU...		Potri.008G192000 [exp]	6.63	0.9139

Compare expression of checked genes

Potri.013G151000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.