Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) AT3G03030 73 / 1e-13 F-box/RNI-like superfamily protein (.1) AT3G59200 73 / 1e-13 F-box/RNI-like superfamily protein (.1) AT1G52650 71 / 1e-12 F-box/RNI-like superfamily protein (.1) AT1G66290 69 / 2e-12 F-box/RNI-like superfamily protein (.1) AT4G14096 69 / 2e-12 F-box/RNI-like superfamily protein (.1) AT3G59210 68 / 6e-12 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G58900 67 / 8e-12 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G59190 67 / 1e-11 F-box/RNI-like superfamily protein (.1) AT3G28410 67 / 1e-11 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104200 [exp] 88 / 9e-19 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 84 / 3e-17 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 83 / 1e-16 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.013G151700 [exp] 73 / 1e-13 AT4G14096 87 / 2e-18 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 71 / 4e-13 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.015G002100 [exp] 71 / 5e-13 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G121400 [exp] 67 / 8e-12 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.017G107600 [exp] 66 / 2e-11 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 62 / 5e-10 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018509 [exp] 493 / 5e-171 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10020748 [exp] 62 / 3e-10 AT3G28410 73 / 4e-14 F-box/RNI-like superfamily protein (.1) Lus10026190 [exp] 60 / 2e-09 AT1G16930 80 / 3e-16 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10042477 [exp] 57 / 2e-08 AT1G16930 77 / 2e-15 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10034161 [exp] 53 / 2e-07 AT1G66310 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10002239 [exp] 53 / 3e-07 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10001507 [exp] 52 / 8e-07 AT5G56440 91 / 6e-20 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10029587 [exp] 51 / 1e-06 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10006513 [exp] 49 / 6e-06 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10006318 [exp] 49 / 1e-05 AT1G69630 74 / 9e-14 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.013G151200.1 pacid=42810832 polypeptide=Potri.013G151200.1.p locus=Potri.013G151200 ID=Potri.013G151200.1.v4.1 annot-version=v4.1 ATGGTAATGGAAACAAGATCCACCAAGAGAAAAAAGTTGTGGTTTGCATCAAATAATGAAGGTGATAATGACATTGACAGGATCAGCGATCTCCCTGATG CTATCCTCCATCACATTCTCTTGCTTCTTCCCCTTAAATCCATTGCTCAAACCAGTGTCTTATCTCAAAGATGGAGATCTCTCTGGTCCTCATTTCCTGA CCTTGATTTCACCACAATGAACCCTAGTAAGGCCATTTGTTCTACACGAAAGCTTAAATCAAAAAGATGGTGGCCTTCGATGGACTTCATCGCCAATGTC CTAGCTCTCCGTGACAAGCATTCTGATCTAAGAGCCCTTCGCTTTCGTGCACATTTGAGTTTCTCCCATCTAAATGGTTTGATCCGAAGAGCAATTAGGT GTAATGTGCAAGAACTTGATGTGGAAGTCGCCACCGGTGATTACTTCAATTTCCCTCGAGGAGTCATAACGAGTGAATCTTTGCGGGTTCTCAAACTGAG ATCTCGGTATCCCGGTTTTAGATTGCTTCCATCTTCGGTAATGACTATTGGGTTTCCATCACTCCACACATTGTCACTATCACTTGTCATTTTATATGAA CAATCCTCCCTCTTGGACTTGTTTACAGAATCGTCATTTCCTTGTCTAAAGAATCTTAATCTCGATGCTTGTTTTGGGATGAAACATCTCAAGGTTTGTT GTCGAGCCCTTGAAGATTTAACAATAGAGAATTGTTTTCAGCTACATAGTTTGGACATTTGTTCTGCAAAATTGGAAAATTTAAGAGTTGCAAGCTGTTT TGATGCATACAGTGATAAGACATGGTTTAAGGTTAATGCACCAAGGCTTAGGGGCATTTCGTGGGAATATAATTCTATTACTGCTAGCAGTTCTCTAGTG AACTTGACCTCTCTGCATGAGGCCTCTGTTGGTTTCTCTCTACTTCATGAAAATTTGAGCGTGGAAAAGCTTCAGAGCGTGTGCAATTTTTTATCTGGAC TCTCTCATGTCCATAGTTTAACTCTTGATAGCCAATGTGTTGAGATTCTATCAAACAAGAACGATATTATAAACCTTCTCCATCCATTTAACAACCTTAA GGTTCTGGAGTTGCATACCGGTTTCGAGAAAAATAATGTACCAGGATTAGCATTCCTATTCAGGAGCTCTCCCACGTTGCACACACTCATCCTCAAGATC ATCAATGACTTCAAGACTGAAAGAAGACAATGGAATAGGGACTTGTGGGACTTGTCTACCTCTGCAGAGGAGCAATATTGGGAATCCCAACTCCAAGCTT TAAGGCCTTTCCTAGACCACCTCAAGGTAGTAAAGATACACGGATTCTTAGAGTGTGAAAACGAAGTTAGCCTAGCAAAGTTTTTGCTCAAGCATGGGAA GGACTTGCAAGAAATGACACTTTGCACAGCAAATTGTTGCAACTTTAAGGATTCTCTTCGGCGACAAAAAGTTCGGTCACAAATAATGGGATTCTCTTGG GCTTCTTCTAATGCTAAAATTGTATTCTTACTGTCCTCTTAA
AA sequence Show only first row Show all	>Potri.013G151200.1 pacid=42810832 polypeptide=Potri.013G151200.1.p locus=Potri.013G151200 ID=Potri.013G151200.1.v4.1 annot-version=v4.1 MVMETRSTKRKKLWFASNNEGDNDIDRISDLPDAILHHILLLLPLKSIAQTSVLSQRWRSLWSSFPDLDFTTMNPSKAICSTRKLKSKRWWPSMDFIANV LALRDKHSDLRALRFRAHLSFSHLNGLIRRAIRCNVQELDVEVATGDYFNFPRGVITSESLRVLKLRSRYPGFRLLPSSVMTIGFPSLHTLSLSLVILYE QSSLLDLFTESSFPCLKNLNLDACFGMKHLKVCCRALEDLTIENCFQLHSLDICSAKLENLRVASCFDAYSDKTWFKVNAPRLRGISWEYNSITASSSLV NLTSLHEASVGFSLLHENLSVEKLQSVCNFLSGLSHVHSLTLDSQCVEILSNKNDIINLLHPFNNLKVLELHTGFEKNNVPGLAFLFRSSPTLHTLILKI INDFKTERRQWNRDLWDLSTSAEEQYWESQLQALRPFLDHLKVVKIHGFLECENEVSLAKFLLKHGKDLQEMTLCTANCCNFKDSLRRQKVRSQIMGFSW ASSNAKIVFLLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03220			Protein with RNI-like/FBD-like...		Potri.013G151200 [exp]	0	1
					Potri.010G110751 [exp]	4.47	0.9666
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Potri.004G073600 [exp]	4.89	0.9669
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Potri.006G226800 [exp]	9.38	0.9610
AT4G30880			Bifunctional inhibitor/lipid-t...		Potri.009G049000 [exp]	11.83	0.9405
AT1G03070			Bax inhibitor-1 family protein...		Potri.005G214000 [exp]	12.44	0.9579
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054000 [exp]	12.68	0.9543
AT2G29500			HSP20-like chaperones superfam...		Potri.004G187202 [exp]	13.85	0.9566
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Potri.013G089200 [exp]	17.66	0.9499
AT3G10020			unknown protein		Potri.013G014300 [exp]	18.00	0.9495
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Potri.013G009700 [exp]	18.57	0.9449

Compare expression of checked genes

Potri.013G151200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.