Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03170 168 / 2e-51 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT5G60490 167 / 4e-51 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G44130 110 / 5e-29 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT1G03870 104 / 1e-26 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT2G20520 96 / 1e-23 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT2G04780 79 / 4e-17 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT3G46550 61 / 1e-10 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT3G60900 54 / 3e-08 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT4G12730 53 / 8e-08 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT2G45470 52 / 1e-07 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151366 [exp] 386 / 8e-137 AT5G60490 167 / 7e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151432 [exp] 341 / 5e-119 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G151500 [exp] 338 / 5e-118 AT5G60490 167 / 4e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.013G014200 [exp] 334 / 3e-116 AT5G60490 167 / 6e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121100 [exp] 334 / 4e-116 AT5G60490 168 / 2e-51 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G121200 [exp] 323 / 1e-111 AT5G03170 166 / 2e-50 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.019G123200 [exp] 319 / 3e-110 AT5G60490 165 / 4e-50 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.019G120800 [exp] 255 / 1e-85 AT5G60490 124 / 2e-34 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.015G129400 [exp] 199 / 3e-63 AT5G60490 206 / 2e-66 FASCICLIN-like arabinogalactan-protein 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036112 [exp] 192 / 1e-60 AT5G03170 197 / 1e-62 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 182 / 2e-56 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002984 [exp] 182 / 2e-56 AT5G03170 192 / 1e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002978 [exp] 178 / 4e-55 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 168 / 3e-51 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002985 [exp] 165 / 6e-50 AT5G60490 180 / 4e-56 FASCICLIN-like arabinogalactan-protein 12 (.1) Lus10019929 [exp] 164 / 6e-50 AT5G03170 295 / 2e-101 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 165 / 1e-49 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036113 [exp] 164 / 2e-49 AT5G03170 173 / 6e-53 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10002979 [exp] 152 / 8e-46 AT5G60490 143 / 1e-42 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [poplar] [flax] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Potri.013G151300.1 pacid=42810741 polypeptide=Potri.013G151300.1.p locus=Potri.013G151300 ID=Potri.013G151300.1.v4.1 annot-version=v4.1 ATGAAGCAACAGTACTCAATCTTCTCATTTTCAATGCTTCTTCTTTCCCTGTGTTATATCAATACCTTTGCCCAGTCACCAACAGCAGCCCCAGCACAGG CACCAGCAGTAGTCGTAGCACAACCTCCAGTCGCAACCCCAACACAGGCTGCTGCACCACACGGCATCACCAACGTCACCAAAATCCTTGAGAAGGCTGG CCATTTCACGATCTTTATCCGCCTTTTGAGATCCACCCAAGAGGAAAACCACTTGTTCTCCGCTCTTAATGATTCAAGCTCTGGTGTAACCATCTTTGCA CCGACAGATAGTGCATTTTCGGAACTCAAATCAGGAACTCTCAATACTCTAAGTGATGGTGACAAGTCTGAGTTGGTGAAGTTCCACGTAGTTCCAACAT TCCTATCCACTTCCCAGTTTCAGACTGTAAGTAATCCTCTTGGAACATGGGCTGGAACAGGTAGTAGGTTACCACTTAATGTCACAAGTTATCCAAACTC GGTGAACATAACCACAGGACTTACCAATACAAGTTTATCTGGCACGGTATACACGGACAACCAGCTAGCCATTTATAAGATCGAGAAGGTGCTACTTCCT AAGGACATTTTTGGATCCAATGCTCCAGCTCCAGCACCAGTACAGGCACCTGCACGAGAAAAACCTACTAAGGCGGTTCCTTCTGCTAATGTAGAGAGTC CTGTTGCTCCTGTGGATATATCTAGCGCAGTTACGTTTATGCATAATAATGTGGTTGGATCACTCGTTATAGTTGCTGCTGCAATGTTTGCTTGTAATGT AGAAGGGTTTTGA
AA sequence Show only first row Show all	>Potri.013G151300.1 pacid=42810741 polypeptide=Potri.013G151300.1.p locus=Potri.013G151300 ID=Potri.013G151300.1.v4.1 annot-version=v4.1 MKQQYSIFSFSMLLLSLCYINTFAQSPTAAPAQAPAVVVAQPPVATPTQAAAPHGITNVTKILEKAGHFTIFIRLLRSTQEENHLFSALNDSSSGVTIFA PTDSAFSELKSGTLNTLSDGDKSELVKFHVVPTFLSTSQFQTVSNPLGTWAGTGSRLPLNVTSYPNSVNITTGLTNTSLSGTVYTDNQLAIYKIEKVLLP KDIFGSNAPAPAPVQAPAREKPTKAVPSANVESPVAPVDISSAVTFMHNNVVGSLVIVAAAMFACNVEGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.013G151300 [exp]	0	1
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151366 [exp]	1.00	0.9883
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.013G151432 [exp]	2.82	0.9803
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	3.87	0.9780	Pt-FLA14.3
AT2G20562			unknown protein		Potri.007G136800 [exp]	4.58	0.9659
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.019G121200 [exp]	4.89	0.9712	FLA14.11
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	5.47	0.9663
AT3G19280		FUCTA, FUCT1, A...	fucosyltransferase 11 (.1)		Potri.009G101500 [exp]	6.16	0.9399	FUCT3.2
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	6.70	0.9696
AT3G15810			Protein of unknown function (D...		Potri.006G067000 [exp]	7.61	0.9184
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.009G012100 [exp]	8.00	0.9574	PtrFLA14-9,FLA14.9

Compare expression of checked genes

Potri.013G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.