Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CDC48.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01610 748 / 0 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT5G03340 446 / 8e-145 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 444 / 8e-144 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 437 / 3e-141 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT2G03670 315 / 3e-97 CDC48B cell division cycle 48B (.1) AT1G03000 254 / 8e-72 PEX6 peroxin 6 (.1) AT3G56690 233 / 3e-64 CIP111 Cam interacting protein 111 (.1) AT5G08470 225 / 3e-61 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT5G15250 172 / 7e-45 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G45000 166 / 7e-45 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125500 [exp] 458 / 2e-149 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 457 / 3e-149 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 452 / 6e-147 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 451 / 2e-146 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 434 / 3e-140 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 322 / 3e-99 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 254 / 5e-72 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.001G174100 [exp] 253 / 7e-71 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 223 / 2e-60 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039722 [exp] 860 / 0 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Lus10037385 [exp] 456 / 1e-148 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 442 / 3e-143 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 437 / 2e-141 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 437 / 4e-141 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 432 / 2e-139 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10018508 [exp] 389 / 2e-127 AT3G01610 334 / 9e-107 embryo defective 1354, cell division cycle 48C (.1) Lus10001402 [exp] 377 / 3e-121 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 383 / 4e-121 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 347 / 1e-104 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.013G151600.1 pacid=42811542 polypeptide=Potri.013G151600.1.p locus=Potri.013G151600 ID=Potri.013G151600.1.v4.1 annot-version=v4.1 ATGGGAAGCGGAAGAAGAAGAAGCGGCGGTGGTGGCGGGGGAAGCGGGGGAGGAAGAAACCAAAGACTGCTTAAACACCACATAGACACCTGTAACAAAA AATTCACCACAACAGACGACATAGTCCACCACCTCCGCAATAGCTACCCCAATTACCGCCGCATGGAACTCAAAACCCTAACTCGCATCGTCCAGCAAAC CCTAAACCAACAAACACCGCCGCCGAAGAAATTCAGAAAACATGAATTGGAAACAGAATCCGATTCCGACGACGAAGAAGCAAACCTTAGTAAGAAGCAG AAGCGAATTGATGAGAGTGAAGAGAAATTGATGCAGATTGAAAATGCGCATTCTAGAAGAAGGAATCGAAATCGGGGCCCGATTTTGGTTTCGAGCTCGG ATACGGAGTCCAGTTCGGAGTCGGATTCGGGTTCGGATTCTTCGACGTCATTAGAGCCACCGAAGTTTGATTTGATGAAATCAATGTTAAGGGAAAGTTA TGGGGTGGCGGAGAAAAATATGGAAGTTGAGCTTGCTAATGATAGAAAAGAAAGTATTACTAGTAAAGTTGACATGATTGAGAGAAATAGAGGGGTAGGA AAGCAAAAAGGAGAGGACTTGGAGGGTAGTTTGGGGAAACTGAAAGGTGGGCTTGGTGAGGATGCGAAGGGGAAGGAAGGGGGGCCGAGGTTTAAGGATT TAGGGGGTTTGAGTGGGATTTTAGAGGAGTTGGAAATGGAGGTGTTTTTGCCATTGTATCATCCAAATGTGCCGCTGAGACTTGGGGTTAGTCCTATAAG TGGGATTTTGTTACATGGGCCACCTGGGTGTGGGAAGACTAAGTTGGCTCATGCTATTGCGAATGAGACTGGGGTGCCTTTTTACAAGATTTCTGCTACT GAGGTTGTTTCTGGTGTTTCAGGTGCATCGGAAGAAAATATCCGAGATCTTTTCTCTAAAGCATACAGGACTGCACCATCTATCATTTTTATTGATGAGA TCGATGCAATTGCTTCAAAGAGAGAGAATTTACAGAGAGAGATGGAGAGAAGGATTGTGACACAATTGATGACTTGCATGGATGAACATCACAGGCTAGG ACAACCATCTGATGACAGTTCAAGTTCAGAAAGCTCTAATCGAATACCTGGAAATGTTCTTGTTATTGGAGCTACAAATAGGCCTGACGCTGTTGACCCT GCACTAAGGAGGCCTGGGAGATTTGATCGCGAGATTAATTTAGGTGTTCCGGATGAGAAAGCTAGGGTTCAAATTCTTTCAGTGCTTACTAAAAATTGTA CTCTTGAAGGTTCTCTTGATATTTTGCAAATAGCCAGGTCTACACCAGGTTTTGTTGGAGCTGATTTGAATGCTTTGGTTAACATGGCTGGTAATCTTGC AATGAGGAGAGTTGCTTCCCAGAGAAAATCTGAGCTATCAGGACAATTGACAGAGAAGGAAGACAATGAGGATTGGTGGAAGCAACCTTGGTCGCCTGAG GAGATGGAAAAGCTTGCCATCACAATGGCTGATTTCGAGAAAGCAGCCAAGCTAGTTCAGCCCTCATCGAAAAGAGAAGGATTCTCTACTATCCCTAATG TCAAATGGGAAGACGTTGGTGGCCTTGATGATATAAGGGATGAGTTTGACCTCTATATCATTAGTCGTATAAAGTATCCTGATGATTATCAGAAATTTGG AGTGAATTTAGAGACAGGGATTTTGCTCTACGGACCTCCTGGCTGTGGCAAAACAATGATCGCTAAGGCTGCTGCTAACGAGGCAGGAGCTAACTTCATT CATGTGAAGGGTCCTGAACTTCTGAATAAGTATGTTGGAGAAAGCGAACTGGCAGTTAGGACGTTATTCAGTCGTGCAAGAACGTGCTCGCCATGCATAA TCTTCTTCGATGAGGTGGATGCTTTGACAACAATGCGTGGAAAAGAAGGGGGGTGGGTTGTTGAGAGGCTCTTAAATCAGTTGCTTATAGAGTTAGATGG TGCAGATCAGCGCCCTGGTATTTTTATCATTGGTGCCACTAACAGACCTGAGGTGATGGACCCTGCTGTCCTGCGGCCTGGTAGGTTTGGCAAACTTCTT TATGTCCCTCTGCCAAGTTCAGAGGACCGTGGATTGATCTTAAAGGCTCTCGCTAAAGGAAAACCTATTGATCCTAGTGTCGACTTGGCTGCCATCGGTC AAATGGAGGCTTGTAAAAATCTTAGCGGGGCTGATCTTAGGAAGCTGATGGAGGAAGCCGCAATGACTGCTTTGAAGGAGGCCAAGAGACAAAGATGTTT GAATGAGACTTCAGGTACAATCACGGCCGCACAAAATGAGCCAGCAGTTAATATCACAGCCACTCATTTTGAGCAAGCCCTTGGTAAAATTTCACCATCC GTGTCAGAGAAGCAAATACAATATTACAAAGCTTGGTCAGAGAGTTTCAAAGCAACATGA
AA sequence Show only first row Show all	>Potri.013G151600.1 pacid=42811542 polypeptide=Potri.013G151600.1.p locus=Potri.013G151600 ID=Potri.013G151600.1.v4.1 annot-version=v4.1 MGSGRRRSGGGGGGSGGGRNQRLLKHHIDTCNKKFTTTDDIVHHLRNSYPNYRRMELKTLTRIVQQTLNQQTPPPKKFRKHELETESDSDDEEANLSKKQ KRIDESEEKLMQIENAHSRRRNRNRGPILVSSSDTESSSESDSGSDSSTSLEPPKFDLMKSMLRESYGVAEKNMEVELANDRKESITSKVDMIERNRGVG KQKGEDLEGSLGKLKGGLGEDAKGKEGGPRFKDLGGLSGILEELEMEVFLPLYHPNVPLRLGVSPISGILLHGPPGCGKTKLAHAIANETGVPFYKISAT EVVSGVSGASEENIRDLFSKAYRTAPSIIFIDEIDAIASKRENLQREMERRIVTQLMTCMDEHHRLGQPSDDSSSSESSNRIPGNVLVIGATNRPDAVDP ALRRPGRFDREINLGVPDEKARVQILSVLTKNCTLEGSLDILQIARSTPGFVGADLNALVNMAGNLAMRRVASQRKSELSGQLTEKEDNEDWWKQPWSPE EMEKLAITMADFEKAAKLVQPSSKREGFSTIPNVKWEDVGGLDDIRDEFDLYIISRIKYPDDYQKFGVNLETGILLYGPPGCGKTMIAKAAANEAGANFI HVKGPELLNKYVGESELAVRTLFSRARTCSPCIIFFDEVDALTTMRGKEGGWVVERLLNQLLIELDGADQRPGIFIIGATNRPEVMDPAVLRPGRFGKLL YVPLPSSEDRGLILKALAKGKPIDPSVDLAAIGQMEACKNLSGADLRKLMEEAAMTALKEAKRQRCLNETSGTITAAQNEPAVNITATHFEQALGKISPS VSEKQIQYYKAWSESFKAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Potri.013G151600 [exp]	0	1	CDC48.4
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.015G048200 [exp]	1.00	0.8403
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	6.00	0.8089
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.005G191700 [exp]	7.07	0.7573
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	8.36	0.8059
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.002G237950 [exp]	8.94	0.7943
AT4G20020			unknown protein		Potri.004G218650 [exp]	9.48	0.8178
AT5G15280			Pentatricopeptide repeat (PPR)...		Potri.017G086000 [exp]	11.22	0.7756
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	11.35	0.8261
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	12.36	0.7935
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	13.96	0.7754

Compare expression of checked genes

Potri.013G151600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.