Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14096 88 / 2e-18 F-box/RNI-like superfamily protein (.1) AT5G53635 83 / 5e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G59200 83 / 8e-17 F-box/RNI-like superfamily protein (.1) AT4G14103 82 / 1e-16 F-box/RNI-like superfamily protein (.1.2) AT3G49030 79 / 2e-15 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT3G26922 77 / 2e-15 F-box/RNI-like superfamily protein (.1) AT2G04230 77 / 4e-15 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G78760 77 / 5e-15 F-box/RNI-like superfamily protein (.1) AT4G00160 76 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G66310 76 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G322900 [exp] 102 / 4e-23 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G042900 [exp] 72 / 3e-13 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G395000 [exp] 72 / 4e-13 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.004G034500 [exp] 69 / 3e-12 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.013G151200 [exp] 69 / 3e-12 AT4G03220 417 / 1e-141 Protein with RNI-like/FBD-like domains (.1) Potri.011G104300 [exp] 66 / 1e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 61 / 7e-10 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.016G106600 [exp] 61 / 1e-09 AT5G56420 80 / 4e-16 F-box/RNI-like/FBD-like domains-containing protein (.1.2) Potri.011G121400 [exp] 59 / 4e-09 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034415 [exp] 61 / 7e-10 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 60 / 2e-09 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10019144 [exp] 56 / 3e-08 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10038967 [exp] 56 / 5e-08 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10024695 [exp] 52 / 4e-07 AT1G69630 83 / 3e-17 F-box/RNI-like superfamily protein (.1) Lus10006866 [exp] 52 / 1e-06 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10002239 [exp] 50 / 3e-06 AT1G69630 91 / 5e-20 F-box/RNI-like superfamily protein (.1) Lus10023037 [exp] 48 / 1e-05 AT1G16930 74 / 2e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027258 [exp] 46 / 3e-05 AT4G03220 74 / 9e-15 Protein with RNI-like/FBD-like domains (.1) Lus10024696 [exp] 46 / 4e-05 AT5G22720 75 / 1e-14 F-box/RNI-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G151700.1 pacid=42812050 polypeptide=Potri.013G151700.1.p locus=Potri.013G151700 ID=Potri.013G151700.1.v4.1 annot-version=v4.1 ATGGAAGAAAAGCCAGACGCCACCGCCACCGCCACCGCCACCGCCACAACAGTCACGAACATTAACGATCTCCCACAAGACATCCTGATCCACATCCTCT CTTTCCTCCCCACACTAGACACAATCACAACAAGCCTTATTTCCACAAAATGGAAACCTCTTTGGTCCTTAGTCCCGTCTCTAAACTTCTCTTACACTCA TTTCCCTCCTTACAACAATTTCTCCACAACCCGCCAATTCTTTTCAGAATTCATTGACCGAACACTAATTCTCAAACCCCAGTTGCCCCTAAAAAAATTC AGGCTTGAATTCATCTATGAGGATAGGTATGGGTACCATGTTGATTCATGGGTACGTTATGCAATCAAGAACCAAGTTTTAGAACTTGATCTTGATTTCT TTATTGATAAAAGTTTTCATATTTTTGAACCAGAAGCAAAACCCAATTATGATTTCCCTTTTTCTGCTCTTAGAAACAGTAAAGTTAGAGTCTTGAAGCT GTGTAGATGTGATTTGACATTGCCTGCTAATATGGAAAGTATGAATCTCTGGTCAATGAATGAGGTTTATTTTGATCAGGTTTATATGACTGATGACACG GTTTTGGATTTGTTCAAAGCTTGTCCTAATATCGAGGTTTTAAAGTTTGAAGATTGTTATGGGATGGAGAATTTGAGGCTTTGTTCAGAGAAGTTGAAAA GGCTGGATCTTTCTAGTTTTTATACTGCTGAGAGGGAATTGCATTTGGAGCTTGATTGTCCTAATCTTGTTTGGTTGAATATTGATTGCTTTGAGATGGG GCAGTTTTGTGTTAAAAATTTGTCTTCTTTGGTTGAGTTTCATACTTTTATTGTGCATGGATTGGAGTACTATGGTCAATGGTGTAAAGTAGTGAAGCAG CTTCATCGAATTGCACACATCAAGCATCTCGTGGTGCAAAATTGGTGGCTTAAGCTTGCACCGAAGGATGTTTTTCCTAAAGATTTTCTGCTGTACAATC TTAAACATTTAGAGCTACAAACCGGGTATACGACATATGATCTTCTTGGCATGGCTGCATTGCTTGAGCTTTGCCCCAATCTTGAGACAATGAACCTTGA TCCCCTATACAAGATAGTTGAAGATGAGAGTTTATCAGAAGAACTCTTAAATAAACCAATTAATCTCTTCATGCCAAACCTCAAGGAAGTCAGGCTGAAA GCATACGTCCCAGGACAAAATCAAAATCAATTTAGTCAATTTGTGTCCCTCCTGAAAAAGCAAGGAGTTGTCCTAGAAAAGATTGTTCTAGTCTCTTTGT ATAATGGGATGTTACTTCCTCCCGTAATTCTGCGTAGAAGGCCTCCAAGGGCTGAAGTTATCGAAGAATCTTCACTGCATGTTGAAGGAAGCCCTGAGCG CTGA
AA sequence Show only first row Show all	>Potri.013G151700.1 pacid=42812050 polypeptide=Potri.013G151700.1.p locus=Potri.013G151700 ID=Potri.013G151700.1.v4.1 annot-version=v4.1 MEEKPDATATATATATTVTNINDLPQDILIHILSFLPTLDTITTSLISTKWKPLWSLVPSLNFSYTHFPPYNNFSTTRQFFSEFIDRTLILKPQLPLKKF RLEFIYEDRYGYHVDSWVRYAIKNQVLELDLDFFIDKSFHIFEPEAKPNYDFPFSALRNSKVRVLKLCRCDLTLPANMESMNLWSMNEVYFDQVYMTDDT VLDLFKACPNIEVLKFEDCYGMENLRLCSEKLKRLDLSSFYTAERELHLELDCPNLVWLNIDCFEMGQFCVKNLSSLVEFHTFIVHGLEYYGQWCKVVKQ LHRIAHIKHLVVQNWWLKLAPKDVFPKDFLLYNLKHLELQTGYTTYDLLGMAALLELCPNLETMNLDPLYKIVEDESLSEELLNKPINLFMPNLKEVRLK AYVPGQNQNQFSQFVSLLKKQGVVLEKIVLVSLYNGMLLPPVILRRRPPRAEVIEESSLHVEGSPER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	0	1
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	1.73	0.7854
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	9.16	0.7135
AT3G28430			unknown protein		Potri.006G073600 [exp]	10.72	0.7168
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Potri.002G096400 [exp]	11.66	0.7065
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	13.49	0.6851
AT5G19420			Regulator of chromosome conden...		Potri.001G026900 [exp]	15.42	0.7099
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214650 [exp]	15.49	0.7217
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	18.16	0.6764
AT5G16890			Exostosin family protein (.1)		Potri.019G049800 [exp]	23.45	0.6624
AT5G10630			Translation elongation factor ...		Potri.006G275500 [exp]	28.35	0.6868

Compare expression of checked genes

Potri.013G151700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.