Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12770 931 / 0 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 561 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 546 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 540 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 530 / 1e-179 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 523 / 3e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 524 / 7e-177 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 521 / 6e-174 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 517 / 6e-173 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G08820 503 / 3e-169 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 568 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 563 / 0 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 558 / 0 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 550 / 0 AT3G22690 582 / 0.0 unknown protein Potri.001G466066 [exp] 550 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 548 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 547 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G181800 [exp] 546 / 0 AT4G30700 1025 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 538 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024876 [exp] 1035 / 0 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 1030 / 0 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10017446 [exp] 571 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 557 / 0 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035815 [exp] 520 / 2e-174 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 518 / 4e-174 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 516 / 2e-172 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 517 / 5e-172 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031989 [exp] 509 / 4e-171 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 509 / 5e-171 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.013G152000.1 pacid=42811022 polypeptide=Potri.013G152000.1.p locus=Potri.013G152000 ID=Potri.013G152000.1.v4.1 annot-version=v4.1 ATGGCTACGTCTCTGCCATTTCTTACAAGGCCTCCAAACAAAGTCTTCTCTTTTATTGCTCTCTGTCCCCAACCCTTTAAAATTCGACCGTTGGATCCTC CTCCATTTAGATTTCCCGCCTCCACTCTCAAATTCCTCGAAACCCATTATTCTTCATCTCTCAATTTAACAACCCACTTCAACAACAACAAGGATGACTG CAATGAAAGTACCTTCAAACCTGACAAATTCTACGCGTCATTAATCGATGATTCGATACACAAAACCCACTTGAACCAAATCTATGCTAAGTTATTAGTA ACGGGGTTGCAATATGGTGGTTTCTTGATAGCAAAATTAGTTAACAAGGCTTCGAATATAGGAGAAGTTAGCTGTGCACGTAAGTTGTTTGATAAATTTC CTGACCCAGACGTGTTTTTGTGGAATGCGATTGTTAGGTGTTATTCTAGGCATGGTTTCTTTGGTCATGCTATTGAAATGTATGCAAGAATGCAAGTTGC GTGTGTTAGTCCTGATGGGTTCAGTTTTCCTTGTGTTCTCAAAGCTTGCAGTGCCTTGCCGGCTCTTGAAATGGGGAGGAGGGTACATGGGCAGATATTT AGACATGGGTTTGAATCGGATGTGTTTGTGCAGAACGGTCTTGTGGCATTGTATGCAAAATGTGGAGAGATTGTGCGAGCTAATGCTGTTTTTGGTAGGC TAGTTGATAGGACTATTGTTTCTTGGACCTCTATTATTTCTGGGTATGCGCAGAATGGACAGCCTATTGAAGCCTTGCGGATTTTTAGTGAAATGAGGAA AACAAATGTGAGACCAGATTGGATAGCGCTTGTGAGCGTTCTTAGAGCATATACAGATGTAGAGGATTTGGAACATGGCAAATCTATTCATGGTTGCGTG ATTAAAATGGGACTTGAATGTGAATTTGATTTGCTCATTTCTCTTACCTCTTTGTATGCAAAATGTGGGCACGTTATGGTTGCTAGATTATTTTTTAACC AGGTGGAGAACCCAAGTTTGATATTTTGGAATGCAATGATTTCTGGTTATGTGAAAAATGGGTATGCCGAGGACGCTATTGAACTGTTCCGTCTAATGAA AAGTAAAAATATAAGACCAGATTCTATTACTGTGACTTCTAGCATTGCAGCTTGTGCACAAATAGGTTCTCTTGAATTAGCAAGATGGATGGATGAGTAT ATCAGCATGAGTGAGTTTAGAAATGATGTGATTGTCAATACTTCCCTCATTGACACGTATGCAAAATGTGGAAGTGTAGATATGGCTCGCTTTGTTTTTG ACAGAATACCAGATAAAGATGTTGTTGTGTGGAGTGCGATGATGGTGGGATATGGATTACATGGGCAAGGTCGGGAATCTATCATTCTTTTTCATGCAAT GAGGCAAGCTGGGGTGTCCCCAAATGATGTCACCTTTGTTGGGCTCCTCACAGCATGCAAAAATTCAGGTCTTGTAGAAGAAGGTTGGGACCTCTTCCAC CGCATGAGAGATTATGGGATTGAACCAAGGCACCAACATTATGCATGTGTGGTGGATCTTCTTGGGCGTGCAGGCCATTTAGATCGAGCTTATAATTTTG TCATGAACATGCCAATTGAACCAGGTGTAAGTGTGTGGGGAGCCCTTTTGAGTGCATGCAAGATCCATCGCCATGTGACACTAGGGGAGTATGCAGCTGA ACGACTTTTCTCATTAGATCCATACAACACGGGGCATTATGTTCAGCTGTCAAACCTCTATGCTTCTTCTTGCTTATGGGATTGTGTTGCAAAGGTACGG GTGTTAATGAGGGAGAAAGGACTTACTAAGCACCTTGGTTATAGTGTGATTGAGATCAATGGAAAGCTCCAGGCATTTCAGGCTGGAGATAAGACGCATC CAAGATCCAAAGAGATTTTTGAGGAAGTTGAGGATTTAGAGAGAAGATTAAAGGAAGCTGGATTTGTCCCCCATACAGAATCTGTCCTGCATGATTTGAA TTATGAGGAAACAGAGGAGACACTTTGTAATCATAGTGAGAGACTAGCGATTGCTTATGGCCTCATCAGTACTCCCCCTGGAACAACCCTTAGGATAACA AAGAATCTTCGGGCATGCGACAACTGTCATGCTGCAATCAAGCTCATCTCAAAGCTGGTAAGTAGGGAGATAGTTGTCAGGGATGCATGTCGTTTCCATC ATTTTAAGGATGGAGCTTGTTCCTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Potri.013G152000.1 pacid=42811022 polypeptide=Potri.013G152000.1.p locus=Potri.013G152000 ID=Potri.013G152000.1.v4.1 annot-version=v4.1 MATSLPFLTRPPNKVFSFIALCPQPFKIRPLDPPPFRFPASTLKFLETHYSSSLNLTTHFNNNKDDCNESTFKPDKFYASLIDDSIHKTHLNQIYAKLLV TGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIF RHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCV IKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEDAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEY ISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFH RMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVR VLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRIT KNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	0	1
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G183100 [exp]	1.00	0.9294
AT1G72390			unknown protein		Potri.001G165800 [exp]	2.00	0.9138
AT1G26500			Pentatricopeptide repeat (PPR)...		Potri.016G086100 [exp]	3.16	0.8880
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	4.00	0.8895
AT2G04860			Tetratricopeptide repeat (TPR)...		Potri.014G029500 [exp]	6.63	0.8746
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	8.48	0.8851
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	8.77	0.8802
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.010G242900 [exp]	9.69	0.8368
AT1G74900		OTP43	organelle transcript processin...		Potri.015G070200 [exp]	11.22	0.8655
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	14.42	0.8783

Compare expression of checked genes

Potri.013G152000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.