Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58450 1252 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042248 [exp] 1414 / 0 AT5G58450 1272 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026402 [exp] 1226 / 0 AT5G58450 1090 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09797 [poplar] [flax] NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit
Representative CDS sequence Show only first row Show all	>Potri.013G152800.2 pacid=42811592 polypeptide=Potri.013G152800.2.p locus=Potri.013G152800 ID=Potri.013G152800.2.v4.1 annot-version=v4.1 ATGGCATCGAAGTTTGGGTTAGCCGGAGGGATACCGGAACGGCGAGTGAGACCGATTTGGGATGCAATCGATTCTCGTCAGTTCAAGAATGCGCTTAAAC ACTCCACTTCGCTCCTCGCTAAATGCCCTAATTCACCTTACGCACTCGCGCTAAAATCACTCATCTTGGAAAGGATGGGTAAATCTGATGAGGCATTATC AGTTTGCTTAAATGCAAAGGAGCTTTTATACAAGAATGATTCCTTGTTAATGGATGATCTAACTCTCAGTACATTGCAGATTGTTTTTCAACGGCTTGAT CGCTTGGATTTGGCTACTGGATGCTATGAGTATGCTTGCAGTAAATTTCCAAGCAATTTGGAACTAATGATGGGACTTTTCAATTGTTATGTTCGTGAGT ATTCATTTGTGAAGCAGCAGCAGACAGCCATCAAAATGTACAAGCTTGTTGGTGAAGAGAGGTTTTTGCTCTGGGCAGTTTGTAGCATCCAATTACAGGT ATTTTGTGGCAATGGAGGAGAGAAACTAGCAATGCTAGCTGAAGGGTTACTTAAGAAGCATGTAGCTTCCCACAGCTTGCATGAGCCTGAAGCTCTTATG GTCTATATTTCCATATTAGAACAACAAGAAAAGTATGGTGATGCATTGGAAATTCTCTCGGGGCAATTGGGATCACTATTAATGATTGAAGTTGATAAGC TACGTATACAGGGGAGGCTTCTTGCTCGGTCAGGTGACTATGCTACAAGTGCCAACATATATCAGAAGATTTTAGAACTATGCCCTGATGATTGGGAGTG CTTCCTACATTATCTAGGCTGTTTGCTGGAGGATGGCAGCAGCTGGAGCAACGGAGCCAACAATGATCCAATTAATCCCCCAAAACCCGTGGATTGCAAA GTCTCTCAATTGGCAGATGATGTGTTTCATTCTCGAATATCGACTTCATTAGCTTTTGTGAAAAAATTACAAGCAGACACCAGTAATGATTTTATTAGGT GTCCATACTTGGCAACTCTTGAAATTGAGAGGAGGAAGCGATTACATGGAAAGGGCAATGATGATGATATTGTGGAGGCTCTAATGCTATATTTCCTCAA GTTTGGTCACTTAGCAAGCTTCAGTTCTGATGTTGAGGCATTTCTGCAAGTCTTAACTCCAGATAAAAAGACGGAGTTTCTTGCAAAGTTGATAAAAACT TTGGACTCCTCTGCTTCTGCACCAACTAAAGTGCTTGGACAGTCAATCACGATTTTCAAAATTCAGGAGTTGACTGGGAACATGTATAAGCTCCCTGTGC TTGAACTTGAAGGCTGTGCCGTACAAATGGTGGAGATGTATTGTAAAAGTCTTCCACTTTCAAAGGATTTGGATCCACAAGAGAGCATGCATGGTGAAGA GCTGCTATCTATGGTGTGCAATGTGTTGGTTCAGCTATTCTGGCGTACAAGACATCTTGGCTACTTCATAGAGGCAATTATGGTTTTGGAGTTTGGCCTG ACTATTCGAAGATATATATGGCAGTACAAGATCTTGTTGCTGCACTTGTATTCACACTTGGGTGCAATTTCGTTAGCTTATGAGTGGTATAAATCCTTGG ACGTGAAGAATATTCTGATGGAAACTGTTTCTCATCACATCTTGCCGCAGATGTTGGTATCTCCCCTTTGGGGGGATTTAAATAATCTGCTGAAAGATTA TCTCAGGTTTATGGATGACCACTTCAGGGAATCTGCTGATCTGACATTCCTTGCTTATCGCCACAGAAACTATTCTAAAGTAATAGAGTTTGTTCAATTC AAGGAGCGATTGCAACGATCTAATCAGTATTTAGTTGCAAGGGTTGAGACACCCATTCTACAGCTAAAACAAAAGGCAGATAACATTGAAGAAGAAGAGG GTGTTCTTGAAAACTTGAATGGCGGGGTTCACTTTGTTGAGCTCTCCAATGAGATTGGATCCAAAAACTTGACATTCAATGAAGATTTCCAATCACGGCC TTGGTGGACACCAACTACAGAGAAAAATTATCTCTTAGGTCCATTTGAAGGAGTATCATATTGTCCCAAGGAAAACTTGACAAAAGAAAGGGAAGAAAAT GTGCGGGGAGTTATTGAAAAGAAATCCCTTCTCCCTCGGATGATTTATCTGTCTATTCACAATGCTTCAGCATCACTTAAGGAGAGTGTTGAAGAAAATG GGTCCGTATCTGGGTCAAAAATCTCCTCAGAGTTTAAGTTTTTGCTTGAGCGCCATGCAAAGATGTTAGGCTTTTCTTTAAGTGATGCAGTTGAAGTGGT TATGGGTGTTTCCAGTGGTGTAAAATCCTTTGAGGCTTTTGGTTCAGACGAGATTGACTGGATAAACTTTGCTGTCTTTTTGAATGCTTGGAATTTGAAT TCCCACGAGCCCTTACAGCCTAATGGAGATCAGTGTGGCCGTGGTATTTGGTACGTAGTGGATACTTTGCTGGTGAAATATATTTCAGAGAAGATCAAAT CCATGGAGTCTCTTATTTGCTCTCCAAGGGTTGATCTTCCAATTTTAGTGCAATTGGTTACAGAGCCATTGGCCTGGCATGGTCTTGTGATTCAATCTTG TGTTCGATCTTCTCTTCCATCTGGAAAGAAAAAGAAGAAAGGTGGGCCTGTGGACCAGCATTCGTCTCTGGTGTTTAATGACATTAGGGATTCAATCCAG TCTTTATGTGATATAGTTAAGGAGGTTGCAAAATGGATCAGAGGTCAGATTGACAGACCAGAGGATGAGAGTGTGGAAATTATACTTTCCTCTCTTAGGA AAAAGGAACAAGATGAAGGGCCTGGGCGTGTTTTTCACGTTCTGGAAAGTTTAATTCCATCAATAAATGAGGCTGAACTTGGTGATCGGATCTCCCAAGA ATTGAAGACATGGAGTCCCCTTGATGTTGCAAGGAAGATAGTGACCGGGGACTCTACATTATTGTCCCAGTTTCTTAATATTTGCGAGTCAAAAATCAAG TCATTTCAGGCATTGAATCAGCAGATAGCTCAAATATAA
AA sequence Show only first row Show all	>Potri.013G152800.2 pacid=42811592 polypeptide=Potri.013G152800.2.p locus=Potri.013G152800 ID=Potri.013G152800.2.v4.1 annot-version=v4.1 MASKFGLAGGIPERRVRPIWDAIDSRQFKNALKHSTSLLAKCPNSPYALALKSLILERMGKSDEALSVCLNAKELLYKNDSLLMDDLTLSTLQIVFQRLD RLDLATGCYEYACSKFPSNLELMMGLFNCYVREYSFVKQQQTAIKMYKLVGEERFLLWAVCSIQLQVFCGNGGEKLAMLAEGLLKKHVASHSLHEPEALM VYISILEQQEKYGDALEILSGQLGSLLMIEVDKLRIQGRLLARSGDYATSANIYQKILELCPDDWECFLHYLGCLLEDGSSWSNGANNDPINPPKPVDCK VSQLADDVFHSRISTSLAFVKKLQADTSNDFIRCPYLATLEIERRKRLHGKGNDDDIVEALMLYFLKFGHLASFSSDVEAFLQVLTPDKKTEFLAKLIKT LDSSASAPTKVLGQSITIFKIQELTGNMYKLPVLELEGCAVQMVEMYCKSLPLSKDLDPQESMHGEELLSMVCNVLVQLFWRTRHLGYFIEAIMVLEFGL TIRRYIWQYKILLLHLYSHLGAISLAYEWYKSLDVKNILMETVSHHILPQMLVSPLWGDLNNLLKDYLRFMDDHFRESADLTFLAYRHRNYSKVIEFVQF KERLQRSNQYLVARVETPILQLKQKADNIEEEEGVLENLNGGVHFVELSNEIGSKNLTFNEDFQSRPWWTPTTEKNYLLGPFEGVSYCPKENLTKEREEN VRGVIEKKSLLPRMIYLSIHNASASLKESVEENGSVSGSKISSEFKFLLERHAKMLGFSLSDAVEVVMGVSSGVKSFEAFGSDEIDWINFAVFLNAWNLN SHEPLQPNGDQCGRGIWYVVDTLLVKYISEKIKSMESLICSPRVDLPILVQLVTEPLAWHGLVIQSCVRSSLPSGKKKKKGGPVDQHSSLVFNDIRDSIQ SLCDIVKEVAKWIRGQIDRPEDESVEIILSSLRKKEQDEGPGRVFHVLESLIPSINEAELGDRISQELKTWSPLDVARKIVTGDSTLLSQFLNICESKIK SFQALNQQIAQI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	0	1
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	2.82	0.7920
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.019G052100 [exp]	3.16	0.7375	Pt-XPO1.1
					Potri.002G067900 [exp]	9.79	0.7455
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	14.69	0.7057
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.009G050600 [exp]	15.00	0.7120
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	16.43	0.7207	CHR919
AT4G11440			Mitochondrial substrate carrie...		Potri.003G127600 [exp]	21.90	0.7263
AT1G05410			Protein of unknown function (D...		Potri.010G086600 [exp]	24.81	0.7129
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.015G139300 [exp]	25.45	0.6921
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.018G048700 [exp]	31.28	0.7160

Compare expression of checked genes

Potri.013G152800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.