Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58430 781 / 0 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G07000 579 / 0 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT5G50380 355 / 2e-113 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G72470 345 / 3e-110 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 337 / 2e-107 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT1G54090 334 / 3e-106 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G13990 328 / 4e-103 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G52340 326 / 7e-103 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1) AT5G03540 322 / 8e-103 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G13150 320 / 2e-100 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G124000 [exp] 1020 / 0 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.001G166400 [exp] 370 / 4e-120 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 367 / 2e-118 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 360 / 7e-116 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 357 / 1e-114 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G060700 [exp] 348 / 4e-111 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.001G325600 [exp] 345 / 3e-109 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.017G068000 [exp] 325 / 1e-101 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.008G017800 [exp] 318 / 6e-100 AT5G03540 960 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022795 [exp] 647 / 0 AT5G58430 796 / 0.0 exocyst subunit exo70 family protein B1 (.1) Lus10008126 [exp] 358 / 4e-115 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10013163 [exp] 345 / 1e-112 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 348 / 5e-112 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10011861 [exp] 333 / 8e-111 AT5G58430 317 / 6e-105 exocyst subunit exo70 family protein B1 (.1) Lus10016764 [exp] 340 / 4e-108 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10021283 [exp] 318 / 5e-100 AT5G52340 995 / 0.0 exocyst subunit exo70 family protein A2 (.1) Lus10041536 [exp] 313 / 2e-96 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1) Lus10043432 [exp] 304 / 3e-94 AT5G03540 1004 / 0.0 exocyst subunit exo70 family protein A1 (.1.2.3) Lus10011334 [exp] 302 / 6e-94 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF03081 [poplar] [flax] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Potri.013G152900.2 pacid=42811132 polypeptide=Potri.013G152900.2.p locus=Potri.013G152900 ID=Potri.013G152900.2.v4.1 annot-version=v4.1 ATGGCGGCAGAGAACGGAGAGGAGAAGCTGATCGCTGTAGCACGCCACATAGCGAAAACGCTAGGCCACAACGAGTCAATGGCTGACGATATTTTGCAAA TCTTCTCAAAATTCGACGGTCGTTTTTCTCGAGAGAAATTGGCCGATAAATTGACAACAGCAGGACAAGAAGAAGATCCTAGAGCTCTTGATCATACTAT CAAGTCCTTAGAGCGTCAGATCTCGCAGTACGTCGCCGCCGACCACCCGATCTGGTCTGACTCTGCTGACTCCTCCGCCTTCCTTGACTGCGTCGACGAG TTAATTTCAACTGTGCGTGGACTCTCCGCCTCCAGTTCCGCCGGAGCGTATTTGGCACGAGCTGAGGATCTTCTTCAGCAGACTATGTTTCGGCTGGAAG AAGAGTTCCGTCTCTTAATTGAACGTGGTGGTGAGTCTTTTGAAACTACTAGATCTTATAATAACGGTAACGGAGAGTTAACGGAGGATAATAGTAATTT ATTGTTTGATGATTCTGACGAGGATGATCATGACTATAGTGATAGTGAAATTCCGGTAGCGCAACGGTTAAGTAATTATGACGTCATAATTGATGCATTG CCGTCGGGGATTATTAACGATTTGCATGAGATAGCGAAGAGGATGGTGGTTTCGGGGTCTGGTAAAGAGTGTTCACACGTGTATAGTAGTTTCCGTAGGG AGTTCTTGGAAGAAAGCCTGTCGAGGTTAGGTTTAGGGAAATTGAGCAATGAAGAAGTGCAAAAGATGCAATGGCAAGAATTGGAGGATGAAATTGATAA GTGGATAAAAGCGGCAAATGTTTCCCTTCGGATTTTGTTTCCAAGTGAGAGGAGGTTGTGTGATCGGGTGTTTTATGGGTTGGGTTCGGTGAGTGACTTG TCATTTATGGAGGTTTGTAGGGGGGCTGTGGTTCAGATTTTGAATTTTGCGGATGCGATTGCGATAGGGAGTAGGTCGCCTGAGAGGTTGTTTAAGGTTT TGGATTTGTTTGAAACGATGAGGGATTTGATGCCGGAGTTTGAGTTTAATTTTAGTGATCAGTATTGTTTGGTTCTCAGGAATGATGCGTTGGGGATATG GAAGAGGTTAGGGGAGGCGATAAGGGGGATTTTTATGGAGTTGGAGAATTTGATTAGGCGGGATCCAGCTAAAGCTCCGGTGCCTCGTGGAGGGCTTCAT CCAATCACACGATATGTGATGAATTATTTACGTGCTGCGTGTAGGTCAAGAGAGTCGTTAGAGCTGGTCTTCGAGGAGAGTGTGAATGTTGCTCCATCAA AAGATTCTACTTTGTCTTCATTGTCGGTTCAAATGGCATGGATTATGGAGTTGTTGGAGAGTAATTTGGAAGTGAAGGCAAAGATTTATGGGGATACTGC CTTGTGCTCTGTCTTCTTGATGAATAATGAGAGGTACATCGTGCAAAAAGTGAAGGATAGTGAATTGGGTTTGCTGCTCGGGGATGATTGGATAAGGAAA CACACTGCAAAAATCAAGCAATACCTTTCGAGTTATCAGAGAAGTTCCTGGAACAAACTTTTGGGGGTATTGAGGGCAGATAGTAGCCCTGTGGCTGCTA ATGTTGGAGGAAAGTCCATGTCTATGAAAGACAGGATTAAGGCATTTAATTCTCAGTTTGAGGAAATTTATAAATCTCACTCCCAGTGGATCATATTTGA TGAGCAGCTAAGAAATGAGCTGAGGAACTCTTTATACAATCTAGTGATGCCAGCTTATAGAAACTTCATTGCAAGGTTTCAAAATGCTCCGGATGTTGGA AGGCATGCCGATAGGTATATTAAGTACACTCTGGAGGATATAGGCACCCAGATTAACGAGTTGTTTGAGGGAGTGAATGGATCCGCAGGTGGCAGGAAAT GA
AA sequence Show only first row Show all	>Potri.013G152900.2 pacid=42811132 polypeptide=Potri.013G152900.2.p locus=Potri.013G152900 ID=Potri.013G152900.2.v4.1 annot-version=v4.1 MAAENGEEKLIAVARHIAKTLGHNESMADDILQIFSKFDGRFSREKLADKLTTAGQEEDPRALDHTIKSLERQISQYVAADHPIWSDSADSSAFLDCVDE LISTVRGLSASSSAGAYLARAEDLLQQTMFRLEEEFRLLIERGGESFETTRSYNNGNGELTEDNSNLLFDDSDEDDHDYSDSEIPVAQRLSNYDVIIDAL PSGIINDLHEIAKRMVVSGSGKECSHVYSSFRREFLEESLSRLGLGKLSNEEVQKMQWQELEDEIDKWIKAANVSLRILFPSERRLCDRVFYGLGSVSDL SFMEVCRGAVVQILNFADAIAIGSRSPERLFKVLDLFETMRDLMPEFEFNFSDQYCLVLRNDALGIWKRLGEAIRGIFMELENLIRRDPAKAPVPRGGLH PITRYVMNYLRAACRSRESLELVFEESVNVAPSKDSTLSSLSVQMAWIMELLESNLEVKAKIYGDTALCSVFLMNNERYIVQKVKDSELGLLLGDDWIRK HTAKIKQYLSSYQRSSWNKLLGVLRADSSPVAANVGGKSMSMKDRIKAFNSQFEEIYKSHSQWIIFDEQLRNELRNSLYNLVMPAYRNFIARFQNAPDVG RHADRYIKYTLEDIGTQINELFEGVNGSAGGRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Potri.013G152900 [exp]	0	1
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Potri.017G013700 [exp]	4.00	0.6919	ERF46
AT1G72790			hydroxyproline-rich glycoprote...		Potri.001G198900 [exp]	5.47	0.6948
AT1G66400		CML23	calmodulin like 23 (.1)		Potri.004G089400 [exp]	9.48	0.6708
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	11.35	0.6859
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.002G216800 [exp]	13.26	0.6785	Pt-RPM1.1
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Potri.019G124000 [exp]	15.87	0.6095
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.006G044600 [exp]	21.63	0.6419	ERD15.1
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.010G173900 [exp]	22.44	0.6690
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	24.08	0.6589
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	25.33	0.6697

Compare expression of checked genes

Potri.013G152900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.