Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G24560 353 / 5e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G30310 351 / 4e-120 GDSL-like Lipase/Acylhydrolase family protein (.1) AT2G31540 350 / 5e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58430 348 / 5e-119 RXF26 GDSL-like Lipase/Acylhydrolase family protein (.1) AT1G06990 343 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G40250 291 / 1e-96 SGNH hydrolase-type esterase superfamily protein (.1) AT2G42990 280 / 2e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45960 280 / 5e-92 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 276 / 3e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G076600 [exp] 356 / 2e-122 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G076700 [exp] 338 / 4e-115 AT1G06990 321 / 2e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 281 / 2e-92 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 279 / 7e-92 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 275 / 2e-90 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 275 / 2e-90 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G061900 [exp] 273 / 2e-89 AT5G45960 405 / 4e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 268 / 6e-87 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 263 / 9e-86 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026406 [exp] 350 / 3e-119 AT1G06990 350 / 4e-119 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026405 [exp] 277 / 3e-91 AT2G24560 287 / 7e-95 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10029958 [exp] 275 / 1e-90 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10008635 [exp] 265 / 2e-86 AT5G03810 460 / 3e-163 GDSL-like Lipase/Acylhydrolase family protein (.1) Lus10013572 [exp] 264 / 4e-86 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 261 / 7e-85 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 259 / 5e-84 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10017279 [exp] 257 / 2e-83 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 257 / 2e-83 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 256 / 6e-83 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.013G153000.1 pacid=42811882 polypeptide=Potri.013G153000.1.p locus=Potri.013G153000 ID=Potri.013G153000.1.v4.1 annot-version=v4.1 ATGGCACCTGCCCTCCTCTTCCTCACATTAGCGACCATATGCAACCTCAGCGGGGCTGCAACCTTGCCCAAATTCTCCAGCATTCTTATCTTCGGCGATT CGACGGTTGATACTGGTAACAACAACTACGTGAAGACAGTGTTCAGAAGTGACCATCCACCGTATGGCCGAGATTTTCCAGGCCACGTTCCTACAGGAAG GTTTTCTAACGGAAAACTCATTCCTGACTTTACAGCCAGCATCCTCGGGATGGAAGAAACTGTTCCGCCTGTCCTCAGTCCAAGCCTAACCGATGACGAT ATTCGCACCGGCGTGTGTTTTGCTTCGGCAGGATCAGGATACGACGTCATGACGACGGTGGCATCCGGAGCCATCCCAATGTACGAGCAACTTGAGTTAT TCCAGAACTATATTACAAGACTCAGGGGAATTGTTGGAGAAGAGGAGGCCAAGAAGATACTTGGCAGAGCTTTCATCATTGTTAGTTCAGGCACTAATGA CTTGATTTACAACTATTATGATATACCCACAAGACGGTATCAGTTCAACAGTATCAGTGGTTATCATGATTATCTGCTGAGTTCTTTACAAAATTTTGTG CAGGAACTGTACAATCTTGGTGGCCGTTTAATGGCGATTGCTGGCCTTCCTCCAATTGGGTGTTTGCCTATTCAGATAGTCACAAGATATGGGAGTTCAG GGAATCTAGCATGTCTAGAAGATCAAAATTCAGACTGTCAAGCCTATAATAAAAAACTTAAAAGGTTACTACCTCCATTGCAGTCATCACTTCCAGGAAG CAGAATTCTCTATGCAGACATTTACGACCCATTATCTGACATGGTTTCCCAGCCACAAAAATACGGTTTTGTCGAGACACATAAAGGGTGCTGCGGAACA GGGGTTGTTGAAGCAGGATCAACCTGTAACAAAGCGACACCAACATGTGGAAATGCTTCTCAGTTCATGTTTTGGGATGCTATCCATCCAAGTGAATCAG CCTACAAGTTCCTAACCGAATATCTAGAGAAAAATATCATTTCCCGATTCAATCCCATATGA
AA sequence Show only first row Show all	>Potri.013G153000.1 pacid=42811882 polypeptide=Potri.013G153000.1.p locus=Potri.013G153000 ID=Potri.013G153000.1.v4.1 annot-version=v4.1 MAPALLFLTLATICNLSGAATLPKFSSILIFGDSTVDTGNNNYVKTVFRSDHPPYGRDFPGHVPTGRFSNGKLIPDFTASILGMEETVPPVLSPSLTDDD IRTGVCFASAGSGYDVMTTVASGAIPMYEQLELFQNYITRLRGIVGEEEAKKILGRAFIIVSSGTNDLIYNYYDIPTRRYQFNSISGYHDYLLSSLQNFV QELYNLGGRLMAIAGLPPIGCLPIQIVTRYGSSGNLACLEDQNSDCQAYNKKLKRLLPPLQSSLPGSRILYADIYDPLSDMVSQPQKYGFVETHKGCCGT GVVEAGSTCNKATPTCGNASQFMFWDAIHPSESAYKFLTEYLEKNIISRFNPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30220			GDSL-like Lipase/Acylhydrolase...		Potri.013G153000 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G096000 [exp]	2.23	0.9967
					Potri.003G165300 [exp]	2.64	0.9918
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126500 [exp]	3.46	0.9898
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.013G051000 [exp]	4.89	0.9943
AT1G29140			Pollen Ole e 1 allergen and ex...		Potri.011G111300 [exp]	5.19	0.9938
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138451 [exp]	6.32	0.9933
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.006G166701 [exp]	6.78	0.9868
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G245600 [exp]	7.34	0.9846
AT1G29450			SAUR-like auxin-responsive pro...		Potri.004G181500 [exp]	7.74	0.9924
AT3G04080		ATAPY1	apyrase 1 (.1)		Potri.019G031200 [exp]	8.12	0.9920	Pt-APY1.2

Compare expression of checked genes

Potri.013G153000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.