Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 427 / 2e-137 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 416 / 4e-133 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 387 / 3e-122 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT5G22900 362 / 9e-113 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 362 / 1e-112 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G05580 336 / 2e-102 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT5G41610 328 / 4e-100 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT2G31910 328 / 6e-100 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT5G01680 327 / 9e-100 ATCHX26 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) AT5G58460 327 / 3e-99 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G123800 [exp] 1031 / 0 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 460 / 6e-150 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 445 / 2e-144 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 420 / 3e-135 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.010G183000 [exp] 402 / 5e-128 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 352 / 3e-109 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.018G098300 [exp] 352 / 3e-109 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.013G142301 [exp] 352 / 4e-109 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.004G131300 [exp] 345 / 3e-106 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026408 [exp] 752 / 0 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 445 / 2e-143 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 443 / 4e-143 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 367 / 4e-114 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10043128 [exp] 348 / 2e-107 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10037374 [exp] 333 / 4e-102 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 323 / 3e-98 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10026398 [exp] 308 / 3e-92 AT5G37060 649 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Lus10040881 [exp] 305 / 7e-91 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 305 / 1e-90 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.013G153200.1 pacid=42810732 polypeptide=Potri.013G153200.1.p locus=Potri.013G153200 ID=Potri.013G153200.1.v4.1 annot-version=v4.1 ATGAATGCATCGAATCCAGACCTTCAGAATCTATGGGTGTGCCAAGGACGTGCTGGTATAATATCAAAAGGGTATTTTTATGGTCAGAATCCACTTTCCC ATACAACTCCTGCTGTTTTGGCACAACTCAGCTTATCTTCATTATGTAGTGTCTTATTACAATACATCCTCACCCCACTTGGTGAAAGCGCTTTCGTTTC ATTGCTGCTGGTAGGGTTCATCCTGGGACCAACACTTTGGGGACGTAGTTCATTCTTGACATCAGTTTATTCAATGAAAAGTATCCAAACCAGCTCGACA TTTGCTTTCTTTGGATGCATTTTTTATATATTTTTGATTGGAATAAAGATGGACCTGGGGATAGTGAAGAGAGCAGGAAGGAAACCTGTGGTCATAGGCT TCCTTACTTTCTTGTTTCCAGTAACGTTGAACCTGATTGTGGCTGGAATTCTTAGCGGAAAAAGGGAATTGGACCCGGTTCTACTTAAGTCTATTTGGCA CGTTGCAATTTTTCAAGCTGTTACCTCCTTTCATGTCATTGTCTGCCTTTTGGCTGATCTGAAACTCGTTAACTCGGAGCTTGGCCAGTTAGCAATATCT TCATCAATGATCAGTGGCATGTGTAGTTGGGGCCTGGTTATTGTGATTTTATTTATAACAGAACTAAAACATGAGCCATTTTGGATTCTGCTGTGTCCTA TATCGTTGATTGTACTCATATTCTATGTATTGAGGCCCCTTATGGTTAAGATGATTGCGAAAACCCCTGAAGGAAAACAGGTCAAAGAGGGATACGTGTT GTCTATCTTTATCATGGTATTAGGAACTGCATTTCTTAGTGAAGTTTTAGGGCACCATGTGGTATTTGGGGCTACCGCTTTGGGCATCGCAGTGCCTCAT GGGCCACCATTAGGAACAGCATTAGAGAACAAGATTGAATCATTTGTTTCTTCGATCCTCCTGCCAAGCTATTTTGTGTTAAGTGTCTCACGCGTTGACC TCCTTTCGATACATTCTGAAACTGTGTTTGTTATCTGCGTGTTTGGTTTAACTAGCTTCATTGGGAAAGTTTTGGGTGGCATGTTGCCTGCACTCTTCTT CAAAGTGCCTCCTGTTGAGGCATTTTCACTAGGCCTTGTAATGAGTTGTCAAGGCATTTCTGACGTTCTGCTCGTACAGCATGGCCACCTCACCTTCCTT GTTGACCGTCAGATGTACAGTATGATGGTCATAAACATGCTTTTTGTGTCAGGAACCTTCACACCTGTAATCAAATTCCTTTACGATCCATCCAGACATT ACAAAGCCAGCAATAAAAGAACAATCCATCATACTAGTCTCAATATGGAGTTTCGCATTCTGGCCGGCATATATCACCAAGATTCCACGCCTTGTATGAT TAGACTTCTCGAGATTTCCAATCCAACAGCCAAGACTCCCATGTGCTGTTACGTAGTCCACCTGGTCCAGCTCGTTGGCAGTTTATCCCCACTCTTCATG TATCATGAGCCTGGAGCAACTGCAAAACTCCCCACTAAGGATTGCGGTCGAATCATAAATGCCTTCAGATTATACGAGCAAGAGAGCAATGGTAATGTTA TTGTCAACTTATTCACATCCATATCGCCTTTTGCCTCTATACATGAGGAAGTTTGTAGGCTTGCCGTGGAGAAGAGAACATCCGTGGTGATTATCCCATT TCATATGCAATGGAGATTCCATGGCATAGAAGACATCACAGAAGCCAGGGCTGTTAACCGTCATATTCTTGCGAAGGCCCCATGCTCTGTAGGTATCTTG GTTGATCGGGGCACCTTAAGTGCCTCCAAACACCATTTTGTATACAAAATTGGAATCATTTTTGTTCATGGAAGAGATGATAGGGAAGCATTAGCATATG GTTTGAGAATGGCGAAGCACTCAAAAGTTTCTCTCACTGTGATCCATTTGATCGATCCAGCCGCGGGAGCCGTGCAGTCTCTTGATATGGATCTTGACGA TGATATTATCACTGAGTTCAAAGCCGCATCCGCTGGAAAAAAGCCTCATTCCTACGTAACGGAATTCGTAAAGGACAGTGTAGAATTGATTACTGTGATC AGATCTGTTCAAAATTCCTATGATCTAATTTTGGTGGGGAGACACCATCGCAGCTTCTCACCAATATTTATGGGACTTACTGAATGGAATGAGTTTCCAG AGCTTGGATTCTTGGGAGACGTGCTAGCATCATCAGATTCCCAGTGCCAGGTTTCTGTGCTTGTGGTGCAACAACAAGTGTATAGAGCTGGAGACAGGAT GAATAGTGCCAAAAACCTTTTGGAAGATTCAGCAGAAACTGTAGAAATAATTTTTGAGTCTACCCAAGGGTGGAAAGACGTAGATATTAGTAGACATAGG ATGCAACCACGCTAG
AA sequence Show only first row Show all	>Potri.013G153200.1 pacid=42810732 polypeptide=Potri.013G153200.1.p locus=Potri.013G153200 ID=Potri.013G153200.1.v4.1 annot-version=v4.1 MNASNPDLQNLWVCQGRAGIISKGYFYGQNPLSHTTPAVLAQLSLSSLCSVLLQYILTPLGESAFVSLLLVGFILGPTLWGRSSFLTSVYSMKSIQTSST FAFFGCIFYIFLIGIKMDLGIVKRAGRKPVVIGFLTFLFPVTLNLIVAGILSGKRELDPVLLKSIWHVAIFQAVTSFHVIVCLLADLKLVNSELGQLAIS SSMISGMCSWGLVIVILFITELKHEPFWILLCPISLIVLIFYVLRPLMVKMIAKTPEGKQVKEGYVLSIFIMVLGTAFLSEVLGHHVVFGATALGIAVPH GPPLGTALENKIESFVSSILLPSYFVLSVSRVDLLSIHSETVFVICVFGLTSFIGKVLGGMLPALFFKVPPVEAFSLGLVMSCQGISDVLLVQHGHLTFL VDRQMYSMMVINMLFVSGTFTPVIKFLYDPSRHYKASNKRTIHHTSLNMEFRILAGIYHQDSTPCMIRLLEISNPTAKTPMCCYVVHLVQLVGSLSPLFM YHEPGATAKLPTKDCGRIINAFRLYEQESNGNVIVNLFTSISPFASIHEEVCRLAVEKRTSVVIIPFHMQWRFHGIEDITEARAVNRHILAKAPCSVGIL VDRGTLSASKHHFVYKIGIIFVHGRDDREALAYGLRMAKHSKVSLTVIHLIDPAAGAVQSLDMDLDDDIITEFKAASAGKKPHSYVTEFVKDSVELITVI RSVQNSYDLILVGRHHRSFSPIFMGLTEWNEFPELGFLGDVLASSDSQCQVSVLVVQQQVYRAGDRMNSAKNLLEDSAETVEIIFESTQGWKDVDISRHR MQPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.013G153200 [exp]	0	1
AT1G43760			DNAse I-like superfamily prote...		Potri.014G186866 [exp]	1.00	0.6973
AT5G09280			Pectin lyase-like superfamily ...		Potri.003G218200 [exp]	7.41	0.6092
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.010G246650 [exp]	20.49	0.5955
AT2G38680			5'-nucleotidases;magnesium ion...		Potri.008G015201 [exp]	21.44	0.6004
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Potri.006G187600 [exp]	21.79	0.6028
AT1G79640			Protein kinase superfamily pro...		Potri.003G186700 [exp]	21.79	0.5990
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Potri.009G117900 [exp]	99.81	0.5798
					Potri.005G043600 [exp]	117.72	0.5278
					Potri.018G041650 [exp]	132.33	0.5253
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.006G245000 [exp]	201.76	0.5325	Pt-ATKC1.4

Compare expression of checked genes

Potri.013G153200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.