Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01710 498 / 8e-174 methyltransferases (.1) AT3G53400 122 / 5e-30 unknown protein AT5G03190 115 / 8e-28 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT1G24480 75 / 3e-15 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G58120 76 / 9e-15 unknown protein AT4G24805 64 / 3e-11 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G16030 51 / 4e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G128100 [exp] 516 / 0 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 501 / 7e-175 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.006G128800 [exp] 129 / 1e-32 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 128 / 3e-32 AT3G53400 420 / 6e-144 unknown protein Potri.002G104500 [exp] 82 / 1e-16 AT1G58120 283 / 1e-91 unknown protein Potri.010G052100 [exp] 67 / 2e-12 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G047700 [exp] 67 / 6e-12 AT1G58120 254 / 6e-81 unknown protein Potri.007G113200 [exp] 64 / 6e-11 AT1G58120 252 / 6e-80 unknown protein Potri.015G088400 [exp] 59 / 2e-09 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012217 [exp] 513 / 2e-179 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10001267 [exp] 507 / 3e-177 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10014232 [exp] 500 / 1e-174 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10022682 [exp] 487 / 2e-169 AT5G01710 698 / 0.0 methyltransferases (.1) Lus10019932 [exp] 110 / 5e-26 AT3G53400 385 / 1e-130 unknown protein Lus10026502 [exp] 107 / 7e-25 AT3G53400 392 / 1e-133 unknown protein Lus10006247 [exp] 69 / 5e-13 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036941 [exp] 69 / 1e-12 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 59 / 2e-09 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 56 / 6e-08 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G153300.1 pacid=42810712 polypeptide=Potri.013G153301.1.p locus=Potri.013G153300 ID=Potri.013G153300.1.v4.1 annot-version=v4.1 ATGGAGCTCTCAAAAAACCTCTTAATAAAATCCACTCTCGCACGTCTCCTCTCATTTATCGTTTTATTCTTCGCCGTCCGTTTCGCATACTTCATAGCAG TCAAAGGCCGATCCTGCGTCTCTAATGACTTCTGCTTCTTTCCTCCACAAAACCTCGACTTCACCATCCACTACCACTCCGCCGCCACCTACCGTTGCAC CGTCGATCATTACCTCTCCGTCTTCCAGGACCTCATCGCCGATGGCTTCCTCTCGCCTATCTCAAAATCTCTCTGCATCGAAACACTAACTGGAGAAGAA ATCATAGCTCTGAAAGAAATCGGCGTTATTGATTCAACCGGAATCTCAAAGAAATCAAAGAAAATAAAGAAATCATCTCCACCGCTGATTCTATCGAACT ATCCTCTATCGTTTCATGACAACACTTTCGATTTCCAGTTCACTAACAACCTCGACTGGTCAGGTCAGCCCGACGAATTCGGGTCAGAGCTTTGTCGAAC TTTAAAACCGGGCGGGTTCTTAGTGATCCATACAAAATCGAGAGATTTATATAGCTTACGATCTTTACTTGATTTGTTTAATTGCTGTAGATTAATCAAA TCGCGTGAAATCAACGGTGTAGATTCAATGTCGATGATGATAATTAGAGAGGTTGTGTTAATGAAAGTAAGAGATTTTTTGTGGAGGGGCAACGTAGGTA GTAATTGCTCGGTTTCGAGGCTAAAACGGGAACTAGCAAAAAATGCCGAGGCTTTGATCGCTAAAGAACCATTGAAGCCATGGATTACATTGAAGAGAAA TTTGAAGAACGTTAAGTACTTAAGTGATAGTGTTGATATTAGTTTTAAGAGAAAATATGTTTATGTTGATGTTGGTGCTAGGAGTTATGGTTCAAGTATA GGCGGCTGGTTCCGAAAAAGTTATCCGAAACAGAATAAGAGTTTCGAAATTTATGCCATCGAAGCCGATAAGGTGTTTTTCGGGGAATATAGATCGAAAA AGGGTGTTCAGCTACTGCCTTATGCGGCGTGGGTGAGGAATGAGACCTTGTTTTTTGGGATCAGCAGGTTTGTTAATAGGAAAATTGTGGAGAAAGGCAG GGGGATGGGGAGGATTCAACCGGTGGTGCAATCGTCGATGAGTTATAAGGCAGATTTGGATACGATTGAAGGGTTTGATTTTGCAGAATGGTTGAAAAAT GTGGTGGTGGAGAGGGATTTTGTGGTGGTGAAATTGGATGTTGAAGGGACTGAGTTTCATTTGATTCCGAGGTTGGTTGAGACAGGTGCGATTTGTTTGA TTGATGAGTTGTTTCTGGAGTGTCATTATAATCGGTGGCAGAGGTGTTGTCCGGGGCAACGGGGTGTTAAGTATCAGAAGACTTATGATCAATGCTTGCA GCTTCTTAATTCTCTCAGAAAGATTGGAGTTCTTGTGCATCAGTGGTGGTGA
AA sequence Show only first row Show all	>Potri.013G153300.1 pacid=42810712 polypeptide=Potri.013G153301.1.p locus=Potri.013G153300 ID=Potri.013G153300.1.v4.1 annot-version=v4.1 MELSKNLLIKSTLARLLSFIVLFFAVRFAYFIAVKGRSCVSNDFCFFPPQNLDFTIHYHSAATYRCTVDHYLSVFQDLIADGFLSPISKSLCIETLTGEE IIALKEIGVIDSTGISKKSKKIKKSSPPLILSNYPLSFHDNTFDFQFTNNLDWSGQPDEFGSELCRTLKPGGFLVIHTKSRDLYSLRSLLDLFNCCRLIK SREINGVDSMSMMIIREVVLMKVRDFLWRGNVGSNCSVSRLKRELAKNAEALIAKEPLKPWITLKRNLKNVKYLSDSVDISFKRKYVYVDVGARSYGSSI GGWFRKSYPKQNKSFEIYAIEADKVFFGEYRSKKGVQLLPYAAWVRNETLFFGISRFVNRKIVEKGRGMGRIQPVVQSSMSYKADLDTIEGFDFAEWLKN VVVERDFVVVKLDVEGTEFHLIPRLVETGAICLIDELFLECHYNRWQRCCPGQRGVKYQKTYDQCLQLLNSLRKIGVLVHQWW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01710			methyltransferases (.1)		Potri.013G153300 [exp]	0	1
					Potri.019G108100 [exp]	2.00	0.6939
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.010G209800 [exp]	2.44	0.6696
					Potri.001G134200 [exp]	6.16	0.5940
					Potri.007G075066 [exp]	6.32	0.6407
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Potri.002G171800 [exp]	10.39	0.6125	CYP703.1
					Potri.015G051201 [exp]	11.95	0.6029
AT1G44414			unknown protein		Potri.002G083100 [exp]	18.43	0.5936
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.004G150900 [exp]	19.89	0.5802
					Potri.006G074850 [exp]	34.58	0.5688
AT1G08790			Protein of unknown function (D...		Potri.013G042400 [exp]	99.59	0.5556

Compare expression of checked genes

Potri.013G153300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.