Plant FIBer expression Database

Potri.013G153801 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10985 88 / 3e-22 WI12, ATWI-12, SAG20 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
AT5G01740 82 / 3e-19 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G125900
[exp]
251 / 2e-85 AT3G10985 93 / 9e-25 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Potri.016G129500
[exp]
110 / 3e-30 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1)
Potri.016G129600
[exp]
99 / 8e-26 AT5G01740 179 / 2e-58 Nuclear transport factor 2 (NTF2) family protein (.1)
Potri.010G182200
[exp]
93 / 3e-24 AT3G10985 123 / 8e-38 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Potri.008G075200
[exp]
92 / 1e-23 AT3G10985 131 / 5e-41 ARABIDOPSIS THALIANA WOUND-INDUCED PROTEIN 12, senescence associated gene 20 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017421
[exp]
143 / 2e-42 AT5G01740 115 / 2e-32 Nuclear transport factor 2 (NTF2) family protein (.1)
Lus10010223
[exp]
145 / 9e-40 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Lus10001261
[exp]
82 / 7e-19 AT5G01740 139 / 1e-41 Nuclear transport factor 2 (NTF2) family protein (.1)
Lus10022755
[exp]
78 / 3e-17 AT5G01740 135 / 5e-40 Nuclear transport factor 2 (NTF2) family protein (.1)
Lus10029439
[exp]
75 / 4e-16 AT5G01740 128 / 3e-37 Nuclear transport factor 2 (NTF2) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0051 NTF2 PF07107 WI12 Wound-induced protein WI12
Representative CDS sequence
>Potri.013G153801.1 pacid=42812328 polypeptide=Potri.013G153801.1.p locus=Potri.013G153801 ID=Potri.013G153801.1.v4.1 annot-version=v4.1
ATGGAACTCATGATACGTACAGTCCACGTTCTCTTTACATTCCCTATAAAACCACCCCCAAAGCTCCCATATTCAAATCTCAAATCCAAAAACAACAAAA
GCAAAACGCAATCACCCCTCTCTTTCTTTCTTCCCCTAAGACTACATCGATCTCTTTGTTCTTTAAAACTGGAAACCAAGCGAGCAAGCCTGGAGGAGAT
CGAAGGAGAACATAACAAGAGGGTTGTGGTAGCCCTGTATGATGCCCTAGTCAACAAAGACATCGAAACGGCACACCGCTTGCTAGCACCTGACCTAGAG
TGGTGGTTTCATGGTCCACCAATTCACCAACAACATTTGATGAACTTACTCACTGGCCAACCACCATCTTCATCTTCGTCAGTAAGACCGAACAACAACT
CCTTCATCTTTCAGTACCCCCTCTCCAATGTTGTCGCCTTTGGATCAATGGTCCTTGTTGAAGGGTTTAACAAGGATTGGAATGTTTCGTGGGTTCATGC
ATGGACTGTCACAAATGGGATCATTACCCAAGTTAGAGAATACTTCAACACTTCTGTTACTGTCACCCGTTTTGGAGATGGAGGGTCATCAATATCATCA
TCACCGGCGATTAGCACTTCTCAGTCTAGGGCTAGTTGCCAAAGCGTTTGGCAAAGTAAGGTCTCTGATAACAAGTCTGTGCCTGGTCTTGTTTTGGCAC
TCTAA
AA sequence
>Potri.013G153801.1 pacid=42812328 polypeptide=Potri.013G153801.1.p locus=Potri.013G153801 ID=Potri.013G153801.1.v4.1 annot-version=v4.1
MELMIRTVHVLFTFPIKPPPKLPYSNLKSKNNKSKTQSPLSFFLPLRLHRSLCSLKLETKRASLEEIEGEHNKRVVVALYDALVNKDIETAHRLLAPDLE
WWFHGPPIHQQHLMNLLTGQPPSSSSSVRPNNNSFIFQYPLSNVVAFGSMVLVEGFNKDWNVSWVHAWTVTNGIITQVREYFNTSVTVTRFGDGGSSISS
SPAISTSQSRASCQSVWQSKVSDNKSVPGLVLAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G10985 WI12, ATWI-12, ... ARABIDOPSIS THALIANA WOUND-IND... Potri.013G153801
[exp]
0 1
AT4G13420 HAK5, ATHAK5 high affinity K+ transporter 5... Potri.001G045200
[exp]
3.87 0.8967
AT2G25735 unknown protein Potri.001G180500
[exp]
11.13 0.9290
AT1G01580 FRD1, ATFRO2, F... FERRIC CHELATE REDUCTASE DEFEC... Potri.014G088000
[exp]
14.69 0.9022 Pt-FRO1.1
Potri.001G307000
[exp]
15.23 0.7911
AT4G20800 FAD-binding Berberine family p... Potri.001G459100
[exp]
20.19 0.8953
AT2G14610 PR-1, PR1, ATPR... pathogenesis-related gene 1 (.... Potri.009G082800
[exp]
24.10 0.8926
AT1G80830 ATNRAMP1, PMIT1... natural resistance-associated ... Potri.005G181000
[exp]
32.49 0.8737
AT2G41130 bHLH bHLH106 basic helix-loop-helix (bHLH) ... Potri.004G055700
[exp]
34.35 0.7894
AT1G80830 ATNRAMP1, PMIT1... natural resistance-associated ... Potri.005G181100
[exp]
34.78 0.8730 Pt-NRAMP1.4
AT4G00910 Aluminium activated malate tra... Potri.001G085900
[exp]
34.85 0.8737

Potri.013G153801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.