Plant FIBer expression Database

Potri.013G153900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G16870 587 / 0 mitochondrial 28S ribosomal protein S29-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020429
[exp]
662 / 0 AT1G16870 585 / 0.0 mitochondrial 28S ribosomal protein S29-related (.1)
Lus10007056
[exp]
647 / 0 AT1G16870 577 / 0.0 mitochondrial 28S ribosomal protein S29-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF10236 DAP3 Mitochondrial ribosomal death-associated protein 3
Representative CDS sequence
>Potri.013G153900.1 pacid=42812163 polypeptide=Potri.013G153900.1.p locus=Potri.013G153900 ID=Potri.013G153900.1.v4.1 annot-version=v4.1
ATGTTGAGGTTTCTTGCGAGATCCTCACTGAAAAACCCTAAATGGAATCCAAAACCCATCATTGCTATTCCTCAATCACCACTTCACAATCACTTCTCTT
CAAAATCAGGCAAATCATCAGCTCCAAAAGGAAACAACAACAAAGCCGACAATCAAAAACCCAAAAAGAACCCAAAAAGATCTGGCCTTGATGATTCAAA
AACTGCTGTATCTGACGCCAAAGAGACTACTGATGAAAGAGTGCTTCGTGCTCGCCTTCTTGCTCAAGACGAGAAGAACCCTTCACTTAATGCTGGTCCT
AATGGGAGGCCTTTGTTTACTAATATCAGTTCTCTCTCTAGACTCTCACGCAAAGACACTTGTTCTTACTTCAAATTCGGAGAGAAGGAGCTGAACCAGA
TGTTGCCAGAGGGATTGCCAATGGGGATGGTTAAGGAGTTTGAGGAATCAATGAGGAGTGCTTTGCTTGTTAGACAAAGTTTTCTGGATCTTCGTGATAA
TTTTAGACGTATTGTTGATCCTCCTTTGCTCTCTTCTGATGGTAAAGGTCTGAAAGTTAGAAAGCAAATTGTATTAGATGGTCCTTCTAACTGCGGGAAG
AGTATCACGCTTGCGATGCTTGTTCATTGGGCTCGTGAAGAAGGTTGGCTGGTGTTTTATGTTCCCAGAGGACGGGAGTGGACTCATGGTGGATATTTCT
ATAAAAACCCAATTACTGGTCTTTGGGATACACCTATTCAGGCAGAAAATGCTCTCAAGGATTTTGTAAAATACAATGAATCTCTCTTGAAGCAATTGCC
ATGCCATATATTTGATCCTGTTCCACTTGGAGAGGGTGCTGGAATTGGATTGTTAAAAGGAGTCGATTCAGTTCCAGTGCCTGAAAGCTCGACTTTGTAT
GACCTGGTTCAAATAGGAATCAAGCAAACACATGCAGCTGTTGGGGTTGTGCTTCGCTTGAGGAAAGAGTTATCACTTGTGAAGGATATTCCTGTCCTCT
TTGCTATTGATCAATATAATAACTGGTTTACGTTCAGCGAGTATGAGGAACCAGTAACTATGCGCTCATGTCGACCAGTACATGCTAGAGAACTTGCAAT
GGTAAATGCTTTTAGGTCTATGATGCATAATAGCATGATGGTGGGTGCCTTTTCTCATTCAACAGCAGTTGGAAAGTTGCGCAAGGATTTGCCAGATGTC
CCTTTAGATGCTCGTGTTAATTTAACACGATATGGTTTAGATGAAGCAGCTGCTGTTTGCCATTACTACCTTAGGCAAAGATTATTGCCTCGAGAAGCAT
TCTCAGAGGAGAGCTGGAAGAAGATATATTATTTGTCAAATGGAAATGGAGCAGAAATGAGAGTGCTACTTCCTTTAATGCAGTGA
AA sequence
>Potri.013G153900.1 pacid=42812163 polypeptide=Potri.013G153900.1.p locus=Potri.013G153900 ID=Potri.013G153900.1.v4.1 annot-version=v4.1
MLRFLARSSLKNPKWNPKPIIAIPQSPLHNHFSSKSGKSSAPKGNNNKADNQKPKKNPKRSGLDDSKTAVSDAKETTDERVLRARLLAQDEKNPSLNAGP
NGRPLFTNISSLSRLSRKDTCSYFKFGEKELNQMLPEGLPMGMVKEFEESMRSALLVRQSFLDLRDNFRRIVDPPLLSSDGKGLKVRKQIVLDGPSNCGK
SITLAMLVHWAREEGWLVFYVPRGREWTHGGYFYKNPITGLWDTPIQAENALKDFVKYNESLLKQLPCHIFDPVPLGEGAGIGLLKGVDSVPVPESSTLY
DLVQIGIKQTHAAVGVVLRLRKELSLVKDIPVLFAIDQYNNWFTFSEYEEPVTMRSCRPVHARELAMVNAFRSMMHNSMMVGAFSHSTAVGKLRKDLPDV
PLDARVNLTRYGLDEAAAVCHYYLRQRLLPREAFSEESWKKIYYLSNGNGAEMRVLLPLMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G16870 mitochondrial 28S ribosomal pr... Potri.013G153900
[exp]
0 1
AT5G57870 eIFiso4G1 eukaryotic translation Initiat... Potri.018G017600
[exp]
2.00 0.8710
AT3G57290 ATINT6, ATEIF3E... eukaryotic translation initiat... Potri.006G047600
[exp]
6.85 0.8860 EIF3.4
AT4G21705 Tetratricopeptide repeat (TPR)... Potri.011G051500
[exp]
7.34 0.8690
AT3G08943 ARM repeat superfamily protein... Potri.006G103300
[exp]
8.94 0.8783
AT4G02930 GTP binding Elongation factor ... Potri.014G138100
[exp]
12.12 0.8666 TUFA.4
AT2G31725 Eukaryotic protein of unknown ... Potri.013G127400
[exp]
14.07 0.8744
AT3G20000 TOM40 translocase of the outer mitoc... Potri.007G000200
[exp]
15.49 0.8697 Pt-TOM40.1
AT1G18850 unknown protein Potri.015G064300
[exp]
20.56 0.8614
AT2G41620 Nucleoporin interacting compon... Potri.015G026200
[exp]
27.96 0.8319
AT4G11630 Ribosomal protein L19 family p... Potri.012G086800
[exp]
29.29 0.8573

Potri.013G153900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.