Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30320 485 / 4e-168 Pseudouridine synthase family protein (.1) AT1G76120 129 / 4e-32 Pseudouridine synthase family protein (.1.2) AT1G20370 90 / 7e-19 Pseudouridine synthase family protein (.1) AT1G34150 56 / 3e-08 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247000 [exp] 86 / 1e-17 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 86 / 2e-17 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.002G061650 [exp] 48 / 1e-05 AT1G34150 474 / 1e-165 Pseudouridine synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026423 [exp] 606 / 0 AT2G30320 459 / 5e-158 Pseudouridine synthase family protein (.1) Lus10042233 [exp] 588 / 0 AT2G30320 447 / 7e-153 Pseudouridine synthase family protein (.1) Lus10021231 [exp] 90 / 8e-19 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10005641 [exp] 90 / 1e-18 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10022949 [exp] 47 / 2e-05 AT5G35400 489 / 2e-172 Pseudouridine synthase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G154200.1 pacid=42811236 polypeptide=Potri.013G154200.1.p locus=Potri.013G154200 ID=Potri.013G154200.1.v4.1 annot-version=v4.1 ATGGCAATCTCTTCTCTCCGTTTCCCGCTCTCTCCATGGCTGCTCCTCAAAACCCCAAAGCTAAAACCCTCCTTCAGATTTTCATTTCCAATCCTACCCT CTTCAAGACACACTCAATTACTACTCCTATGCTCTTACTCTCAATCTCCACCGTCCATTTCTCCTCCCTTAACGGACTCAAACTCAAATCAGTCCCTCCA TTCAAAATGGGAATCTATTAGAAAGAAAAAGGTTGCTTTGCGGGTTGGCTATGTGGGTACTGATTATAGAGGTCTTCAAAAGCAACATGACCAGCATTCA TTATTGACTATTGAAGGAGAATTGGAACGTGCTATATATGAGGCTGGTGGGATTCGTGAAAGTAATTATGGCAATTTGAATAAAATTTCGTGGGCTAGAA GTAGCCGGACAGACAAAGGAGTTCACTCATTGGCAACAACTATAACAATGAAAATGGAGATACCGGAAAATGCATGGAAGGATGACCTTTATGGAATGGT TCTTGCGAAACATGTTAACTCTTATCTCCCTGATAGTATTAGAGTTTTGAGCATCTTACCAGCACAGAAGAGTTTTGATCCCAGAAGGGAGTGTGATATA CGGAAATACTCTTATCTCCTTCCTGCCGAAGTTATTGGCATCAAAAGTCACTTCAGCATGGCTGAAATTGATGATCACATATCAGACTTCAATAACATAT TAAATGCATTTGAGGGAGACCATCCTTTTCATAATTATACAGTACGGTCGAAGTACCGGAGAAAATACCCAACAAAAAATGGCCATGTGTCAAAGAGAGC TAGATCATCTTGGGGGACATCAGCCTCTGGATCTGAGGAAAGTGATGATGAAGAAAATTTGGAAATTGATGGAACAAGTTCATCAGATCATGTGGAATTG AGTCAGAACTCTTTGGAATCCAGCATTTGTGATCTGAATGGGGATATTTTGAAGGATCAAAGTTCAAATTTACCTCTTCGTGCAAGATGGCTACATGAAC CTGACGAGACAGACAGAATAGGTGCTGCCCACTTCAGAAAGATTTTTCGTTGTTCTTGTGGAAAGCTGGAGAAATCTCTTGGATTTGATTTTGTTGAGAT TTCTATATGGGGAGAGTCTTTCATGTTACATCAGATCCGCAAAATGGTAGGGACAGCTGTGGCTGTAAAGCGGAAGGTACTTCCAAGAGATCTCATAATG TTGTCACTGACAAAGTTCTCAAGGATTGTTCTACCCCTTGCTCCATCTGAAGTTCTGATTTTGAGGGGAAACGATTTTTCCTTGAGAAAAAAATCTGGTG AAGGGAAAAGGCCTGAAATGGAGACAATGGTCGAATCAGAAGAGATTCTCAGGGCTGTGAATGAGTTCTATTCTACTATGATGCTACCTCAAGTTTCAAA ATTCTTGGACCCTTGCATGCCTCTCTGGAAGGAATGGGTTGAGAATTTGGACAAGTACACAAGCATTCCTGATGCACAATTGGATGAAGTCAGGATTGCT CGGAAAGTCTGGATGGAAAATTTTAAGATCAGGAAAAGCATTGAATCTGTTGTAAATCAGTGA
AA sequence Show only first row Show all	>Potri.013G154200.1 pacid=42811236 polypeptide=Potri.013G154200.1.p locus=Potri.013G154200 ID=Potri.013G154200.1.v4.1 annot-version=v4.1 MAISSLRFPLSPWLLLKTPKLKPSFRFSFPILPSSRHTQLLLLCSYSQSPPSISPPLTDSNSNQSLHSKWESIRKKKVALRVGYVGTDYRGLQKQHDQHS LLTIEGELERAIYEAGGIRESNYGNLNKISWARSSRTDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYLPDSIRVLSILPAQKSFDPRRECDI RKYSYLLPAEVIGIKSHFSMAEIDDHISDFNNILNAFEGDHPFHNYTVRSKYRRKYPTKNGHVSKRARSSWGTSASGSEESDDEENLEIDGTSSSDHVEL SQNSLESSICDLNGDILKDQSSNLPLRARWLHEPDETDRIGAAHFRKIFRCSCGKLEKSLGFDFVEISIWGESFMLHQIRKMVGTAVAVKRKVLPRDLIM LSLTKFSRIVLPLAPSEVLILRGNDFSLRKKSGEGKRPEMETMVESEEILRAVNEFYSTMMLPQVSKFLDPCMPLWKEWVENLDKYTSIPDAQLDEVRIA RKVWMENFKIRKSIESVVNQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30320			Pseudouridine synthase family ...		Potri.013G154200 [exp]	0	1
AT4G09730		RH39	RH39 (.1)		Potri.005G198300 [exp]	2.00	0.9371
AT1G36320			unknown protein		Potri.005G170400 [exp]	3.00	0.9382
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.019G127000 [exp]	4.58	0.9367
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	6.00	0.9338	Pt-FTSZ.1
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Potri.002G053900 [exp]	9.48	0.8994
AT3G16260		TRZ4	tRNAse Z4 (.1)		Potri.001G186900 [exp]	11.61	0.9010
AT4G31210			DNA topoisomerase, type IA, co...		Potri.006G279700 [exp]	16.43	0.8889
AT4G23940			FtsH extracellular protease fa...		Potri.001G089800 [exp]	16.88	0.9114
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.001G201400 [exp]	19.97	0.9083
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Potri.004G163600 [exp]	21.16	0.8974

Compare expression of checked genes

Potri.013G154200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.