Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06950 1258 / 0 ATTIC110, TIC110 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127000 [exp] 1661 / 0 AT1G06950 1278 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042231 [exp] 980 / 0 AT1G06950 927 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10008580 [exp] 751 / 0 AT1G06950 735 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10026424 [exp] 322 / 1e-101 AT1G06950 377 / 7e-123 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1) Lus10042232 [exp] 90 / 2e-20 AT1G06950 142 / 1e-39 ARABIDOPSIS THALIANA TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110, translocon at the inner envelope membrane of chloroplasts 110 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16940 [poplar] [flax] Tic110 Chloroplast envelope transporter
Representative CDS sequence Show only first row Show all	>Potri.013G154300.2 pacid=42810870 polypeptide=Potri.013G154300.2.p locus=Potri.013G154300 ID=Potri.013G154300.2.v4.1 annot-version=v4.1 ATGAGCCCTTCTCTCCTCACTTCCTCTCCTTCCACTTCTTTCCTCTCCCCTCTTCCTTTCAAACTCACTCCTTCCTCTCTAACCCTCCCTAAACGCCACC GTTTCCGCGTCTCCTACCCCCGCAGCTCCGCCGCAGAATACCCTTCCGCCATCACCTTAGAATCGAAACCCGATGATCTTTTTGGAGGAAAGAGAGAGCT ATCAGGAGCTCAATCTATAGTAAGTAATCTCTCGCCAACGCTAAGACTGGCGAGCTCGGCGCTAATTCTAGCTGGTGCTTTAGCTGCTGGGTATGGTTTA GGGACTAAGTTCGGTGGTGGCTCTCGGAATTTGGCTCTTGGTGGTGGTGCTGTGGCTGGAGCAGCTGTTGGGGCTGTGGTTTTTTCGTTGAATTCGGCTG TTCCCGAGATTGCCGCCATAAATTTGCATAATTATGTTTCTGGGTTTGATGACCCTACTAAAGTCAGTAAAGAGGAGATTGAAGGCATTGCTAAAAAGTA TGGTGTGAGCAAGCAAGATGAGGCATTTAATGCAGAGCTTTGTGATTTATACTGCCAGTTTGTGTCTTCTGTCCTTCCTCCTGGGGGTGAAGAGCTTAGA GGGAATGAAGTTGACACAATCATCAACTTCAAAAATGCTTTGGGCATGGATGACCCAGATGCAGCTAGCATGCATGTGGAGCTTGGGAGGCGGATTTTCA GGCAAAGGCTCGAAACTGGAGATCCTGATGGTGATGTAGAGCAACGTCGGGCATTTCAGAAATTGATCTATGTTTCAACTCTTGTTTTTGGAGAAGCATC GTCATTTCTTTTACCTTGGAAGCGTGTTTTCAAGGTCACTGATTCCCAGGTTGAAATTGCTATCCGTGATAATGCCCAGAGGTTATATACTTCAAAGCTA AAATCAGTTGGCAAAGATATTGATGTGGAGCAGCTTGTTAACCTCAGACAAGCGCAGATTTCTTATCAACTTTCTGACAAGCTTGCAGAGGACTTGTTTA GGCAGCATACAAGAAAACTGATTGAGGAAAATATTTCAGCAGCTCTTGATAGATTAAAATCAAGGACGAGAACAGTCCAGGATGTTGTGAAAGTTGTGGA AGAGCTTGATAAGATATTGGCATTCAACAATAAGCTTATTTCATTAAAGAACCATACAGATGCAGCTTCGTTTGCCTGCGGAGTTGGTCCAGTTTCTGTA CTAGGTGGTGAGTACAGTAGTGAGAGAAAGATAGATGACTTGAAGCTCCTTTACAGGGCTTATATAACAGATGCGTTATATGGTGGTCGCATGGAAGAAC ATAAGCTTGCTGCTTTAAATCAATTGAAGAATATATTTGGTTTAGGTAAGAGGGAGGGAGAATCAATTAGGCTTGATGTTACTTCAAAGGCATATCGTAA ACGACTTGCACAGGCTGTTTCAAGTGGTGATTTAGAATATGCCGATAGCAAAGCAGCCTTCCTACAAAATCTTTGTGAGGAGTTGCACTTTGATCCACTG AAAGCCACTGAGATTCATGAAGAAATTTACCGGGAAAAGCTTCAGCAATGTGCAGCTGATGGAGAGTTGAGTGACGAGGATGTTAAAGCATTGACCCGTT TGAGAGTCATGCTCTGTATTTCTCAGCAAATTATTGATGCAGCCCATTCTGATATCTGTGGCAGTTTATTTGAAAAGGTGGTTAAAGATGCAATTGCTTC AGGGGTCGATGGCTATGATGCTGATGTTAAGAAGGCTGTAAGAAAGGCTGCTCACGGCTTGCGCTTAACACGGGAGGCTGCCATGCCTATCGCTGGCAAG GCGGTCCGAAGGATTTTCTTAAACTACATAAAGCGAGCACGGATGGCGGAAAACCGCACCGAGGGTGCTAAAGAACTAAGGAAATTGATTGCCTTCAATT CCTTGGTGGTGACTGAACTGGTGGCTGACATAAAAGGGGAATCTTCTGATGCTCCACCAGAAGAACCTAGTAAGGTGGAAGAAAATAAAGTTGAAGAGGA TGAGGAATGGGATGATGATGAGGAATGGGAGTCCCTTGAGACACTTAAGAAAATAAGACCTGGTGAGGAGGTTGCTGCAAAGATGGGTAAGCCTGGCCAG ACAGAGATAAACCTTAAAGATGACCTTCCTGAAAGAGATAGGACTGACCTTTACAAGACATATCTACTTTACTGCCTAACTGGGGAAGTTACCAGAATTC CATTTGGTGCTCAAATCACCACAAAAAAGGATGATTCAGAGTACCTCTTGCTGAATCAGCTTGGTGGAATTTTGGGTTTGACTGTGATGGAAATTGTGGA AGTCCACAGGAGCCTAGCTGAGCAGACTTTTAGGAAACAAGCCGAGGTAATTTTAGCTGATGGACAATTGACAAAAGCCAGGATTGAGCAGCTCAATGAC CTGCAGAAGCAAGTTGGCTTGCCACCCGAGTATGCACAGAAGGTGATAAAGAACATCACAACTACAAAAATGGCAGCTGCTCTTGAAACTGCTATCAATC GAGGGAGGCTTAATATGAAGCAGATAAGAGAGCTCAAGGAAGCAAGTATTGACTTCAACAGCATGATATCTGAAAACTTGCGAGAAAACCTGTACAAGAA AACTGTAGATGAAATTTTCTCATCAGGCACTGGGGAGTTTGACGAGGAGGAAGTCTATGAGAAAATCCCAGAAGATCTTAACATTAATGCAGAGAAGGCT AAGGGGGTTGTCCATGAGCTTGCACGAAGTAGACTGTCAAACTCACTGGTTCAGGCTGTGGCACTACTGAGGCAGAGAAATCAACAAGGAGTGGTTTCTA CTCTTAATGACCTGCTGGCTTGTGATAAAGCTGTGCCTTCTGAGCCATTGACATGGGAGGTGCCAGAGGAGTTAGCTGATTTGTACACCATCCACATGAA AAATAACCCAGCACCAGAAAAACTGTCACGACTGCAGTATTTGCTGGGCATAAGTGATTCAACTGCCACTGCTCTTGGAGAGATGAAAGATAGAGTGCCC CCAGTTGGGGCAGAGGAAGAAAAGTTTGTGTTCTAA
AA sequence Show only first row Show all	>Potri.013G154300.2 pacid=42810870 polypeptide=Potri.013G154300.2.p locus=Potri.013G154300 ID=Potri.013G154300.2.v4.1 annot-version=v4.1 MSPSLLTSSPSTSFLSPLPFKLTPSSLTLPKRHRFRVSYPRSSAAEYPSAITLESKPDDLFGGKRELSGAQSIVSNLSPTLRLASSALILAGALAAGYGL GTKFGGGSRNLALGGGAVAGAAVGAVVFSLNSAVPEIAAINLHNYVSGFDDPTKVSKEEIEGIAKKYGVSKQDEAFNAELCDLYCQFVSSVLPPGGEELR GNEVDTIINFKNALGMDDPDAASMHVELGRRIFRQRLETGDPDGDVEQRRAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAQRLYTSKL KSVGKDIDVEQLVNLRQAQISYQLSDKLAEDLFRQHTRKLIEENISAALDRLKSRTRTVQDVVKVVEELDKILAFNNKLISLKNHTDAASFACGVGPVSV LGGEYSSERKIDDLKLLYRAYITDALYGGRMEEHKLAALNQLKNIFGLGKREGESIRLDVTSKAYRKRLAQAVSSGDLEYADSKAAFLQNLCEELHFDPL KATEIHEEIYREKLQQCAADGELSDEDVKALTRLRVMLCISQQIIDAAHSDICGSLFEKVVKDAIASGVDGYDADVKKAVRKAAHGLRLTREAAMPIAGK AVRRIFLNYIKRARMAENRTEGAKELRKLIAFNSLVVTELVADIKGESSDAPPEEPSKVEENKVEEDEEWDDDEEWESLETLKKIRPGEEVAAKMGKPGQ TEINLKDDLPERDRTDLYKTYLLYCLTGEVTRIPFGAQITTKKDDSEYLLLNQLGGILGLTVMEIVEVHRSLAEQTFRKQAEVILADGQLTKARIEQLND LQKQVGLPPEYAQKVIKNITTTKMAAALETAINRGRLNMKQIRELKEASIDFNSMISENLRENLYKKTVDEIFSSGTGEFDEEEVYEKIPEDLNINAEKA KGVVHELARSRLSNSLVQAVALLRQRNQQGVVSTLNDLLACDKAVPSEPLTWEVPEELADLYTIHMKNNPAPEKLSRLQYLLGISDSTATALGEMKDRVP PVGAEEEKFVF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	0	1
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	1.41	0.9273
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	2.00	0.9073
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	2.44	0.8904	Pt-PHYB.1
AT5G62620			Galactosyltransferase family p...		Potri.012G072400 [exp]	2.82	0.9123
					Potri.018G138206 [exp]	3.87	0.9090
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	6.48	0.8792	LUG.1
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	6.63	0.8874
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	8.48	0.8851
					Potri.018G145600 [exp]	8.66	0.8928
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G107800 [exp]	8.83	0.8821

Compare expression of checked genes

Potri.013G154300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.