Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06900 1461 / 0 Insulinase (Peptidase family M16) family protein (.1) AT2G41790 484 / 3e-154 Insulinase (Peptidase family M16) family protein (.1) AT3G57470 424 / 7e-133 Insulinase (Peptidase family M16) family protein (.1), Insulinase (Peptidase family M16) family protein (.2), Insulinase (Peptidase family M16) family protein (.3) AT5G01440 125 / 1e-31 unknown protein AT3G02090 61 / 5e-09 MPPBETA Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) AT3G57460 55 / 2e-07 catalytics;metal ion binding (.1) AT5G56730 48 / 4e-05 Insulinase (Peptidase family M16) protein (.1) AT5G42390 48 / 5e-05 SPP stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050700 [exp] 465 / 3e-147 AT2G41790 1503 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Potri.004G118900 [exp] 61 / 2e-09 AT3G02090 822 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.017G092400 [exp] 58 / 2e-08 AT3G02090 832 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Potri.002G235700 [exp] 47 / 9e-05 AT5G42390 1822 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1) Potri.014G149200 [exp] 47 / 9e-05 AT5G42390 1815 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042213 [exp] 1415 / 0 AT1G06900 1311 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10008604 [exp] 1382 / 0 AT1G06900 1271 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10018072 [exp] 458 / 4e-144 AT2G41790 1451 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10018071 [exp] 443 / 2e-138 AT2G41790 1377 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10042064 [exp] 430 / 2e-134 AT2G41790 1320 / 0.0 Insulinase (Peptidase family M16) family protein (.1) Lus10040886 [exp] 57 / 6e-08 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10040885 [exp] 56 / 1e-07 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10004939 [exp] 56 / 2e-07 AT3G02090 869 / 0.0 Insulinase (Peptidase family M16) protein (.1), Insulinase (Peptidase family M16) protein (.2) Lus10012918 [exp] 50 / 1e-05 AT5G56730 1501 / 0.0 Insulinase (Peptidase family M16) protein (.1) Lus10021970 [exp] 46 / 0.0002 AT5G42390 1122 / 0.0 stromal processing peptidase, Insulinase (Peptidase family M16) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0094 [poplar] [flax] Peptidase_ME PF00675 [poplar] [flax] Peptidase_M16 Insulinase (Peptidase family M16) CL0094 [poplar] [flax] Peptidase_ME PF05193 [poplar] [flax] Peptidase_M16_C Peptidase M16 inactive domain CL0094 [poplar] [flax] Peptidase_ME PF16187 [poplar] [flax] Peptidase_M16_M Middle or third domain of peptidase_M16
Representative CDS sequence Show only first row Show all	>Potri.013G154600.1 pacid=42811323 polypeptide=Potri.013G154600.1.p locus=Potri.013G154600 ID=Potri.013G154600.1.v4.1 annot-version=v4.1 ATGTTTAAGATCGCTGCAGCCTTCGGTGTATGCAAGATAGTGAGCCCTTCCTTTCAAAAGCCTCTCTCTCTTGGAATTACCTTTTCTCCTCAAACTCAAA GAAAGAAAGAGAGAGAAACAATGGTGGCGCTTTGCGTTTCAAGGTCAGACGACGTCGTAATAAAGTCACCGAATGATAAGAGACTGTATAGAGTGATTGA ACTAGAGAACGGACTCTGTGCTTTGCTCGTTCACGATCCGGAGATTTATCCAGATGGAGTTCCAGATGAATCTGGAACAGTAGAATATGGTGAAAACGAT GTTGAAGAAGAGGAAGACGATGACGATGAAGATGACGACGAAGAAGAAGAAGACGACGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAA ATAGTGAAGGAGAGGAAGAGAAAGGAAAGGGAGGTGCTTCTTTGCAGACTAAGAAGGCAGCGGCAGCAATGTGTGTAGCAATGGGGAGCTTTTCTGATCC TGCTGAAGCCCAGGGTCTTGCTCATTTTCTAGAACACATGCTTTTCATGGGGAGTGAAGAGTTTCCAGATGAGAATGAGTATGATAGTTTCTTGTCCAAG CATGGCGGCTCATCAAATGCATATACTGAAGCTGAGCATACCTGCTACCATTTTGAAGTCAAACGTGAATTTCTTAAGGGTGCTTTGAGAAGATTTTCTC AGTTTTTTGTTTCACCCCTCATGAAATCTGAAGCTATGGAAAGAGAGGTACTTGCTGTAGATTCAGAATTTAACCAGGTTTTGCAAAGCGATGCTTGCCG CCTTCAACAGCTGCAATGCCATACATCTGGACCTGGTCATCCATTTAACAGATTTTCCTGGGGCAATAAGAAGAGCCTTGTTGATGCCATGGAGAAAGGG ATAAATTTGCGGGAGCACATATTAAAATTATATAGAGATTACTACCATGGTGGGCTAATGAAGCTGGTTGTCATTGGAGGAGAACCTCTGGATGTACTTG AGAGCTGGGTTACTGAATTGTTCGCTAAAGTCAGAAAAGGTCCTCAGACAAAGCCAAAATTTCAGGTGGAAGGCCCTATATGGAAAGCTGGTTTGCTTTA TAGGTTAGAGGCTGTAAAAGATGTGAACATCCTCGATTTAACATGGACACTACCTTGTCTTCACCAAGATTATCTGAAGAAATCTGAAGATTATTTAGCC CATCTGCTTGGGCATGAGGGCAAAGGAAGCTTGCATTCATTTCTCAAAGCAAGAGGATTGGCAACTTCCTTGTCTGCGGGAGTTGGGGATGAAGGAATGC ATCGATCTTCTTTAGCTTACATCTTTGGCATGTCCATTCACTTGACTGACTATGGCTTGGAAAAGATTTTTGACATCATTGGCTTTGTTTATCAATACCT TAAGCTGTTACGAGAAGTTCCGCCTCAACAATGGATATTTAAGGAACTACAGGATATTGGAAACATGGAATTTAGATTTGCAGAAGAGCAACCTCAGGAT GATTATGCTGCAGAACTTGCAGAAAATTTGCTTGTTTTCCCAGCAGAAAATGTTATATATTGTGACTATGTGTACAAGATTTGGGATGAGAAAGCTATAA AACATTTACTGCAGTTCTTTACACCAGAAAACATGAGGATTGATGTGGTGTCCAAGCCATCTGTGAAGTCTCAAGATCTCCAATGTGAGCCTTGGTTTGG ATCATCTTATATTGAAGAAGCTATTCCGCCATCTTTGATAGAAATATGGAGGGACCCATCAGAAGTTGATGTTTCATTACATATGCCTTCAAAGAATGAG TTTGTTCCGAGTGACTTTTCAATTCGTGCTGATAACTTAGACCATGATCTTGTCAATGCATCCTTCCCAAGATGTATAATTGATGAACCATTAATGAAGT TCTGGTACAAGCTTGATAGCACTTTTAAAGTACCTCGTGCAAATACATATTTCCGCATATATCTGAAAGATGGATATGCAAGCATGAAGAGTTTTCTCAT GACTGAACTGTTTATTCTCCTTCTGAAAGATGAGCTGAATGAGATAATTTATCAGGCCAGTGTAGCCAAGTTGGAAACATCCATATCTCTTGTGAGTGAC AAGCTGGAGCTAAAGGTTTATGGTTTCAACGAGAAGCTCCCAGCTCTCTTATCTAAGGTTTTGGTGATAGCGAAATCTTTTTTGCCATCTGATGATCGTT TTAAGGTTATTAAAGAGGATTTGGAGCGAAATTTAAAAAATGCTAATATGAAGCCTCTAAGTCATTCATCATACTTGAGGCTTCAAGTTCTGTGTAAGAG CTTCTACGATGTCGAGGAGAAGCAATGTGTTCTAAGTGACCTGTCTCTTGCAGATTTAAATGCATTTATTCCTGAGCTTCGTTCACAGCTATATATCGAG GCCCTTTGCCATGGCAATTTGTTACAAGAAGAAGCAATCAACTTATCAAATATAATTAGAAATAACTTGTCTGTACAACCACTTCCAGTCAATATGAGGC ATGAAGAGCATGTAATATGTCTTCCATCTAGTGCCAATCTTGTGAGAGATGTCAATGTGAAGAATAAATCAGAAACAAACTCTGTGGTCGAGCTTTATTT CCAGATTGAGCCAGAAGTGGGGTTGGACTCAATAAAATTGAAGGCCTTGGCAGATCTTTTTGATGAAATTGTGGAAGAACCACTTTTTAATCAGCTAAGG ACAAAAGAGCAGCTTGGCTATGTTGTTGAATGTAGCCCGCGTGTGACCTATCGTATTAATGGGTTTTGTTTCATAGTCCAATCTTCCAAGTACAACCCAG TTTACTTGCTAGGAAGGATTGAAAATTTCATAAATGGGCTTGAAGAGTTGTTAGAAGGACTTGATGATGCATCCTTTGAGAACTACAAAAGTGGGTTAGT GGCTAAGCTACTGGAGAAAGATCCTTCCCTCCAGTATGAAACCAATCGGCTGTGGAATCAAATAACCGATAAAAGGTATGTGTTCGACTCCTCACTGAAA GAAGCAGAAAAGCTTAAAAGCATTCACAAGAGTGATGTCATCAACTGGTTCAGAACCTATTTGCAACAATCATCGCCGAAGTGTAGGAGACTTACAATTC GGCTTTGGGGTTGCAACATCGACTTGAAAGAAGTTGAAACTCGACCAGATTCTGAGCAGGTTATTACAGACATCACTGCCTTTAAGGTATCATCCGAGTA CTATCCGAGCCTTTGCTGA
AA sequence Show only first row Show all	>Potri.013G154600.1 pacid=42811323 polypeptide=Potri.013G154600.1.p locus=Potri.013G154600 ID=Potri.013G154600.1.v4.1 annot-version=v4.1 MFKIAAAFGVCKIVSPSFQKPLSLGITFSPQTQRKKERETMVALCVSRSDDVVIKSPNDKRLYRVIELENGLCALLVHDPEIYPDGVPDESGTVEYGEND VEEEEDDDDEDDDEEEEDDEEGEEEEEEEEEEENSEGEEEKGKGGASLQTKKAAAAMCVAMGSFSDPAEAQGLAHFLEHMLFMGSEEFPDENEYDSFLSK HGGSSNAYTEAEHTCYHFEVKREFLKGALRRFSQFFVSPLMKSEAMEREVLAVDSEFNQVLQSDACRLQQLQCHTSGPGHPFNRFSWGNKKSLVDAMEKG INLREHILKLYRDYYHGGLMKLVVIGGEPLDVLESWVTELFAKVRKGPQTKPKFQVEGPIWKAGLLYRLEAVKDVNILDLTWTLPCLHQDYLKKSEDYLA HLLGHEGKGSLHSFLKARGLATSLSAGVGDEGMHRSSLAYIFGMSIHLTDYGLEKIFDIIGFVYQYLKLLREVPPQQWIFKELQDIGNMEFRFAEEQPQD DYAAELAENLLVFPAENVIYCDYVYKIWDEKAIKHLLQFFTPENMRIDVVSKPSVKSQDLQCEPWFGSSYIEEAIPPSLIEIWRDPSEVDVSLHMPSKNE FVPSDFSIRADNLDHDLVNASFPRCIIDEPLMKFWYKLDSTFKVPRANTYFRIYLKDGYASMKSFLMTELFILLLKDELNEIIYQASVAKLETSISLVSD KLELKVYGFNEKLPALLSKVLVIAKSFLPSDDRFKVIKEDLERNLKNANMKPLSHSSYLRLQVLCKSFYDVEEKQCVLSDLSLADLNAFIPELRSQLYIE ALCHGNLLQEEAINLSNIIRNNLSVQPLPVNMRHEEHVICLPSSANLVRDVNVKNKSETNSVVELYFQIEPEVGLDSIKLKALADLFDEIVEEPLFNQLR TKEQLGYVVECSPRVTYRINGFCFIVQSSKYNPVYLLGRIENFINGLEELLEGLDDASFENYKSGLVAKLLEKDPSLQYETNRLWNQITDKRYVFDSSLK EAEKLKSIHKSDVINWFRTYLQQSSPKCRRLTIRLWGCNIDLKEVETRPDSEQVITDITAFKVSSEYYPSLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06900			Insulinase (Peptidase family M...		Potri.013G154600 [exp]	0	1
AT3G46220			unknown protein		Potri.001G234300 [exp]	1.00	0.7878
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120400 [exp]	21.09	0.7197
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G224075 [exp]	31.62	0.7216
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.007G004100 [exp]	32.07	0.6883	Pt-VALRS.2
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.016G037300 [exp]	39.05	0.6837	Pt-ORG2.3
AT2G21630			Sec23/Sec24 protein transport ...		Potri.014G178500 [exp]	45.98	0.7089
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Potri.002G243900 [exp]	61.48	0.6908
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Potri.004G069400 [exp]	72.09	0.6864
AT5G38880			unknown protein		Potri.004G114600 [exp]	105.46	0.6557
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	149.99	0.6394

Compare expression of checked genes

Potri.013G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.