Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EXP2.8,PtrEXPA2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40610 368 / 3e-130 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G26770 350 / 4e-123 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G05290 342 / 4e-120 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT1G69530 342 / 6e-120 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT2G03090 331 / 1e-115 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT5G56320 318 / 2e-110 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G39700 312 / 6e-108 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT2G37640 306 / 8e-106 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT3G55500 304 / 1e-104 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT5G02260 302 / 5e-104 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G057500 [exp] 396 / 2e-141 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.016G135200 [exp] 374 / 1e-132 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 370 / 4e-131 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.010G167200 [exp] 346 / 2e-121 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.008G088300 [exp] 343 / 2e-120 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G123200 [exp] 337 / 5e-118 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G085300 [exp] 330 / 4e-115 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.001G001100 [exp] 329 / 6e-115 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.013G060800 [exp] 323 / 8e-113 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034227 [exp] 382 / 2e-135 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10008603 [exp] 374 / 2e-132 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10042214 [exp] 364 / 1e-128 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10009917 [exp] 362 / 8e-128 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10029038 [exp] 361 / 3e-127 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10026614 [exp] 335 / 3e-117 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 332 / 7e-116 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 328 / 2e-114 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10040286 [exp] 314 / 1e-108 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 312 / 5e-108 AT2G39700 445 / 3e-160 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.013G154700.1 pacid=42812042 polypeptide=Potri.013G154700.1.p locus=Potri.013G154700 ID=Potri.013G154700.1.v4.1 annot-version=v4.1 ATGGCAGCTCAAACATTCGCTTCATGTCTTCTTCTCTTCATTTGCCTACACCTTCAAAGCATTTTGGCTGATTATGGAGGGTGGCAAGGTGGTCATGCCA CTTTCTATGGCGGTGGTGATGCGACTGGCACAATGGGAGGAGCATGTGGATATGGAAATTTGTACAGTCAGGGTTATGGAACTAGCACTGCAGCCCTAAG CACTGCCTTGTTCAACAATGGCTTGAGCTGTGGTGCTTGTTATGAAATGAGATGTGATGATGACCCCAAATGGTGTCTCCCCGGTACCATCACTGTCACT GCTACAAATTTTTGCCCACCTAACCCTTCTCTGCCTAACAACAATGGTGGATGGTGCAATCCTCCTCTCCAACATTTTGACATGGCTGAGCCTGCTTTCT TGCAAATTGCTCAATACCGTGCTGGAATTGTGCCTGTAGCTTTTAGAAGGGTGCCTTGTGTTAAGAAGGGAGGAATTAGATTTACCATCAACGGTCACTC CTACTTCAACTTGGTCCTGATCACCAATGTTGGTGGTGCGGGAGATGTTCATTCAGTTTCAATCAAAGGCTCGAAAACAGGGTGGCAAGCCATGTCAAGA AACTGGGGCCAAAACTGGCAAAGCAACAATTACCTCAACGGTCAAAGCCTATCTTTTCAAGTCACCACCAGTGATGGTAGAACTGTCACAAGCTACAATG CGGTGCCTGCTGGCTGGCAGTTTGGTCAGACTTTTGAAGGAGGCCAGTTTTAA
AA sequence Show only first row Show all	>Potri.013G154700.1 pacid=42812042 polypeptide=Potri.013G154700.1.p locus=Potri.013G154700 ID=Potri.013G154700.1.v4.1 annot-version=v4.1 MAAQTFASCLLLFICLHLQSILADYGGWQGGHATFYGGGDATGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGACYEMRCDDDPKWCLPGTITVT ATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSR NWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYNAVPAGWQFGQTFEGGQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	0	1	Pt-EXP2.8,PtrEXPA2
AT3G12710			DNA glycosylase superfamily pr...		Potri.010G175300 [exp]	1.00	0.8727
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Potri.001G085100 [exp]	3.16	0.8220
AT3G14760			unknown protein		Potri.001G382800 [exp]	3.31	0.7136
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	5.29	0.8005	PtrAUX7
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	5.47	0.7775
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	6.92	0.7454
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.005G188900 [exp]	7.34	0.7723
AT1G55740		RS1, ATSIP1	raffinose synthase 1, seed imb...		Potri.011G166700 [exp]	8.12	0.6743	AGA1.1
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	8.36	0.7508
AT4G30410			sequence-specific DNA binding ...		Potri.006G177000 [exp]	10.24	0.8041

Compare expression of checked genes

Potri.013G154700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.