Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51620 485 / 2e-159 PAP/OAS1 substrate-binding domain superfamily (.1.2) AT3G56320 391 / 3e-126 PAP/OAS1 substrate-binding domain superfamily (.1) AT3G61690 404 / 3e-124 nucleotidyltransferases (.1) AT2G40520 328 / 2e-103 Nucleotidyltransferase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128800 [exp] 1219 / 0 AT3G51620 487 / 2e-160 PAP/OAS1 substrate-binding domain superfamily (.1.2) Potri.015G020400 [exp] 419 / 3e-129 AT3G61690 1025 / 0.0 nucleotidyltransferases (.1) Potri.019G056800 [exp] 401 / 5e-129 AT3G56320 535 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1) Potri.002G169732 [exp] 417 / 6e-129 AT3G61690 1239 / 0.0 nucleotidyltransferases (.1) Potri.014G097600 [exp] 412 / 6e-127 AT3G61690 1198 / 0.0 nucleotidyltransferases (.1) Potri.012G000900 [exp] 410 / 4e-126 AT3G61690 907 / 0.0 nucleotidyltransferases (.1) Potri.011G116501 [exp] 68 / 2e-13 AT3G61690 82 / 6e-19 nucleotidyltransferases (.1) Potri.010G199500 [exp] 43 / 0.0009 AT2G39740 446 / 3e-153 HEN1 suppressor 1, Nucleotidyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022746 [exp] 513 / 1e-171 AT3G51620 659 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10042221 [exp] 499 / 1e-166 AT3G51620 424 / 8e-138 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10025239 [exp] 484 / 4e-159 AT3G51620 689 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10006095 [exp] 478 / 1e-156 AT3G51620 686 / 0.0 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10030266 [exp] 409 / 1e-133 AT3G61690 640 / 0.0 nucleotidyltransferases (.1) Lus10004018 [exp] 412 / 1e-126 AT3G61690 1098 / 0.0 nucleotidyltransferases (.1) Lus10030265 [exp] 409 / 3e-123 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004019 [exp] 392 / 5e-123 AT3G61690 543 / 9e-176 nucleotidyltransferases (.1) Lus10008592 [exp] 380 / 2e-121 AT3G51620 308 / 5e-94 PAP/OAS1 substrate-binding domain superfamily (.1.2) Lus10034219 [exp] 362 / 9e-115 AT3G56320 458 / 1e-154 PAP/OAS1 substrate-binding domain superfamily (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G154900.1 pacid=42812743 polypeptide=Potri.013G154900.1.p locus=Potri.013G154900 ID=Potri.013G154900.1.v4.1 annot-version=v4.1 ATGGGTGATCTTCAAGTTTGTGGCTTTCCAACTGAAAACGGCCATCTTCACCACCACCATCATCACCATAACGATCATGATCATCACCATCGCCTTCTGG GTTCGGGTCAAGACCCGGTTTCTCCTTCTTCTTCTTCGAATCCGGATCCCGGGTCAATTGTTGAAGACAATTGGGAGAGAGCAGAGGAAGTTGCAACAGA GATTGTTTATAGAATTCACCCAACTGTAGAATCCAGTTTCAAGAGGAAACAAGTTATTGATTATGTTCAAAGACTCATTAGATACTCTCTTGGGTTCGAG GTGTTCCCATATGGGTCAGTTCCTTTAAAGACGTATCTCCCTGATGGGGATATTGACTTGACTGCCATTAGCAGTCCTGCCATTGAGGAAGCTTTGGTCT CTGATGTTTATACTGTTCTAAGAGGAGAAGAGCTGAATGAGGATGCCCTGTATGAAGTGAAGGATGTCCATTGCATTGATGCCGAGGTTAAGCTTATAAA ATGTATTGTACAGAATACGGTGGTAGATATTTCCTTCAATCAATTGGGAGGACTTTGTACCCTATGCTTTCTTGAAGAGGTTGATCGGCTCGTTGGAAAA AACCACCTCTTCAAACGCAGCATCATTCTGATCAAAGCTTGGTGCTATTATGAGAGTCGTATTCTTGGTGCCCATCATGGTTTGATTTCAACATATGCTT TGGAAACGCTAATTCTGTACATCTTCCATCTATTTCACTCTTCCTTAAACGGGCCTTTGGCGGTTCTCTACAAATTTTTGGATTACTTCAGCAAGTTTGA CTGGGAGAATTATTGTATTAGTTTAAATGGACCAGTCTGCAAATCTTCCCTTCCCAATATTGTTGCTAAGCCACCTGAAAATGTGAGTGGTGAATTATTG CTGAGTGATGAATTTCTCAAAGATTGTGTGAATAGGTTCTATGTCCCGTCAAGAAAGCCTGAGATGAACTCACGGCCTTTTCCCCAAAAGCATCTTAATA TAGTTGATCCTTTGAAGGAAAATAATAACCTTGGGCGCAGTGTCAACAGAGGTAATTTCTTTCGAATAAGGAGTGCCTTCAAATATGGGGGTCGCAAGCT TGGCCGAATTCTTTTGTTACCCAGAGAGAAAATAGCTGATGAGCTCAAAACATTCTTTGCAAATACTTTGGATAGGCATGGAAGTGACTATTGGAGTGAT GTGCAAAATTCTGAATTAGCATCTGTTGCTAGAAGTTCTGATAATTCAGTTTCACTGTCGTCGCATTCTGATACATGCTCTGAAGACAATACACGTCTGA AATCCACTGATGGCTATGATAGGGATACATTATTTTCTGAAAAATCTGATCATACTCCTCAAGTCCATCACCCAGGCTTATCTGGTGAAAATGGAAGAAT TAAAAATGGTATCTCCTGTAGAGAAATGCTTATAAATTCTGGAACCGAGGATGAAATGAGCTGCACTGTAGGGTCTGAACCTAAACAGAATCATTTTGCG AATAGCAATTCAGTCTGTTCATGCACTAAGCACGAGGGAATAGCTCCATCTGCTTCAACAACCCCCAATTCTGCTGAAAGTGTCCCAGAGAACCTATCAC CTACTCTTGGAGGAAAATACTGTGCTGGCATTCCTAGAAACTCCCAACCTTTGAAATCCTTGTTGGGCCTCAGAGGGGATCACGATGACCACTTACAAAG TTTGGCATACAGTCAGTATTGCCATATGTATGCTGTATCTGCACCTATACCACCCTGTCCTTCCATGTCACCTCAGTCAGAGAACAATAATCGTTGGGAA ACTGTTCGACAGTCCCTACAGTTGAAGCGGAATGGTCATTCTCAAATGAACACGAACCATGTTTATGGAACACAATTCTACTGTGTTAACCCAGTGGCAC CATTTAGAGCTGCTACAAATTCTGAAGAAAAGAAGGAACGACGAGGAACAGGAACATACATTCCCAACATGAGCTATCACGCATATATGGGGGATAGGCT GTACTCGGGAAAAGGAAGGACTCAGGCACTAGTGAATCATGGTCAGTTGCATAAACATGCCCATGAAAATGATTTGCCTACAACTTCGCAGGTGAAGAAT TTGTCTGAACATGGCCATGATCTTTCGGAGGCTGAGTACCCTCATCTTGGTAATGGGAAGCCTATGCCACCAGAGGCTCACCACTCTTACCCTTCTGCAT GGGGATCTTCCAACGCCTATAGCTCCTCCCGTGCATCAGTGAGAACTGATTGTGGATCTCAGGGCCTTCAGCATCCAGAAGGGCTTCCATCCACATCAGA TTTGGGCACATCGTACTCTGGGGCCTCAGCTACAAGCCCTGTCGCATCAGTGGTTGAGGACCCTGACTCAATTTTGGAAACTGAGCAAGAAAGGGCGTTG TTGCAGCAATATCATCTTAAAGACGATGTTGATTTTCCTCCTCTGACTCAGAAGGATTTGTGA
AA sequence Show only first row Show all	>Potri.013G154900.1 pacid=42812743 polypeptide=Potri.013G154900.1.p locus=Potri.013G154900 ID=Potri.013G154900.1.v4.1 annot-version=v4.1 MGDLQVCGFPTENGHLHHHHHHHNDHDHHHRLLGSGQDPVSPSSSSNPDPGSIVEDNWERAEEVATEIVYRIHPTVESSFKRKQVIDYVQRLIRYSLGFE VFPYGSVPLKTYLPDGDIDLTAISSPAIEEALVSDVYTVLRGEELNEDALYEVKDVHCIDAEVKLIKCIVQNTVVDISFNQLGGLCTLCFLEEVDRLVGK NHLFKRSIILIKAWCYYESRILGAHHGLISTYALETLILYIFHLFHSSLNGPLAVLYKFLDYFSKFDWENYCISLNGPVCKSSLPNIVAKPPENVSGELL LSDEFLKDCVNRFYVPSRKPEMNSRPFPQKHLNIVDPLKENNNLGRSVNRGNFFRIRSAFKYGGRKLGRILLLPREKIADELKTFFANTLDRHGSDYWSD VQNSELASVARSSDNSVSLSSHSDTCSEDNTRLKSTDGYDRDTLFSEKSDHTPQVHHPGLSGENGRIKNGISCREMLINSGTEDEMSCTVGSEPKQNHFA NSNSVCSCTKHEGIAPSASTTPNSAESVPENLSPTLGGKYCAGIPRNSQPLKSLLGLRGDHDDHLQSLAYSQYCHMYAVSAPIPPCPSMSPQSENNNRWE TVRQSLQLKRNGHSQMNTNHVYGTQFYCVNPVAPFRAATNSEEKKERRGTGTYIPNMSYHAYMGDRLYSGKGRTQALVNHGQLHKHAHENDLPTTSQVKN LSEHGHDLSEAEYPHLGNGKPMPPEAHHSYPSAWGSSNAYSSSRASVRTDCGSQGLQHPEGLPSTSDLGTSYSGASATSPVASVVEDPDSILETEQERAL LQQYHLKDDVDFPPLTQKDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.013G154900 [exp]	0	1
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	1.00	0.8376
AT5G54585			unknown protein		Potri.001G409600 [exp]	2.44	0.7031
AT5G01960			RING/U-box superfamily protein...		Potri.013G160000 [exp]	3.87	0.6911
AT5G63910		FCLY	farnesylcysteine lyase (.1)		Potri.007G101600 [exp]	5.47	0.7180
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.005G129500 [exp]	7.74	0.6822
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	8.36	0.6636
AT3G62140			unknown protein		Potri.014G112900 [exp]	8.48	0.7020
					Potri.018G034950 [exp]	19.36	0.5961
AT3G03160			unknown protein		Potri.015G035400 [exp]	20.85	0.6328
AT1G27752			Ubiquitin system component Cue...		Potri.014G016900 [exp]	22.49	0.6735

Compare expression of checked genes

Potri.013G154900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.