Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06920 130 / 3e-34 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT2G30400 117 / 2e-29 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G01840 105 / 7e-26 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT5G58360 106 / 1e-25 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT4G18830 86 / 4e-18 OFP ATOFP5, OFP5 ovate family protein 5 (.1) AT5G19650 76 / 1e-15 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 76 / 3e-15 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 71 / 3e-14 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 64 / 8e-12 OFP Ovate family protein (.1) AT2G36030 60 / 1e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128500 [exp] 555 / 0 AT1G06920 129 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.016G134200 [exp] 275 / 2e-88 AT1G06920 117 / 1e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.006G107700 [exp] 259 / 1e-82 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Potri.004G062100 [exp] 103 / 4e-24 AT4G18830 104 / 9e-25 ovate family protein 5 (.1) Potri.005G125200 [exp] 86 / 3e-18 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 85 / 5e-18 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.006G156176 [exp] 84 / 5e-18 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.007G028000 [exp] 85 / 8e-18 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.018G080100 [exp] 83 / 2e-17 AT5G19650 107 / 8e-28 ovate family protein 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014164 [exp] 126 / 4e-34 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10042224 [exp] 130 / 5e-34 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10008589 [exp] 127 / 3e-33 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10025241 [exp] 123 / 2e-31 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 121 / 9e-31 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10015236 [exp] 96 / 2e-21 AT4G18830 112 / 1e-27 ovate family protein 5 (.1) Lus10011092 [exp] 84 / 9e-18 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10043243 [exp] 83 / 2e-17 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 78 / 1e-15 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10013318 [exp] 72 / 4e-14 AT3G52525 82 / 4e-19 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [poplar] [flax] Ovate Transcriptional repressor, ovate PF13724 [poplar] [flax] DNA_binding_2 DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G155200.1 pacid=42812475 polypeptide=Potri.013G155200.1.p locus=Potri.013G155200 ID=Potri.013G155200.1.v4.1 annot-version=v4.1 ATGCTGAACTTTTTTCTAGTGAGCCCCCATCTATTCTTTACCTTTTATAACCCAAACTTTGTAAGCTCTTTTTATCTTTTCAGTAATCAAAGAGAGGGAA AGGTAAACCAACTCAGACAAATCTCAGAGAGGGAAAGAAAAATGGGTAATTACAGGTTTAGATTATCAGATATGATACCAAACGCCTGGTTTTACAAGCT CAAGGACATGAGCAAAAGCAGAAAGCATTACACCTCTCGAGCTTCCAAGAAAAAACCACCTCCAGGAACTGTAACATCGCAAAAACCCAACATTTCTCAT CAAAGATACTCTTATTACTTCACCACAGAACCTGAAAGAGCTGAGAAATTAGATTACTATTCACCTGCAAATCCAAAAGCCTCAGATACTCACTTCCCTG ATCCACCAAGAAAATCATCCAATAGAAGAAACAAAAGAAAAACCATTTACAAGCCTTCTCCAAAACTGGTGTCCACATTCTCTGCTGATTGTAGCTGTCG CGTTACAGTTAACTCGAACCTGACCGGGTTTATTCCAGGTGATTCACCTGACTGCTCTAGCTCTCCTGTTGAGAGCTCTTATGATGAGCTTGACTTCCTA TCAGAATCTGATGAAGATGATGGTTTTCTTGTTCCTGATTCAATTGATCATCATTTAGCCTCCTGGTCTAGCTCTTGTAACTGTAATGTTAGCTCTTCAA CCACTGACATTATCATTGATATGAATGAAGAATCCTATGAAAGGAAAATCAAGGAGGTTGAAGGGTTTGGTAGGATCCCTGAGCTAAACCTTCCTCCTAT ACTGACCAAGCCTGAGAAATTCAACGACAATGAAGTTACTAAGTTCAGAAGAAGTTCATCCAAATTGGAGGAGGTCAAAGCACATAGGTCTCTCTCTGTC AAGATTGTCAAGGAGAAAAGCATTAGGACTTATAAAGAGAAAAAGATGAATCCTCCTACAAGAAAGTCCTCGGTGAATTCGGCAAAAGGGATAAAACTCC GAGCAAATACTCCAAGAATTGCAAGCAGGAAAATTCAGGGTTGTTCTCGAAAAAGTGTGTCATTGTCAACAAACAAGACCCTTTCAGAGAGCTTTGCAGT GGTTAAGTTCTCAGTTGATCCACAGAGAGACTTCAAGGATTCAATGGTGGAGATGATTGTGGAGAACAATATCCGAGGTTCAAAAGATTTGGAAGACCTT CTTGCTTGTTACCTTTCTCTCAATTCAAAAGAATACCATTATATCATTGTCAAGGCATTTGAGCAAATCTGGTTTGACATGACTGACCTTCACTTGTAA
AA sequence Show only first row Show all	>Potri.013G155200.1 pacid=42812475 polypeptide=Potri.013G155200.1.p locus=Potri.013G155200 ID=Potri.013G155200.1.v4.1 annot-version=v4.1 MLNFFLVSPHLFFTFYNPNFVSSFYLFSNQREGKVNQLRQISERERKMGNYRFRLSDMIPNAWFYKLKDMSKSRKHYTSRASKKKPPPGTVTSQKPNISH QRYSYYFTTEPERAEKLDYYSPANPKASDTHFPDPPRKSSNRRNKRKTIYKPSPKLVSTFSADCSCRVTVNSNLTGFIPGDSPDCSSSPVESSYDELDFL SESDEDDGFLVPDSIDHHLASWSSSCNCNVSSSTTDIIIDMNEESYERKIKEVEGFGRIPELNLPPILTKPEKFNDNEVTKFRRSSSKLEEVKAHRSLSV KIVKEKSIRTYKEKKMNPPTRKSSVNSAKGIKLRANTPRIASRKIQGCSRKSVSLSTNKTLSESFAVVKFSVDPQRDFKDSMVEMIVENNIRGSKDLEDL LACYLSLNSKEYHYIIVKAFEQIWFDMTDLHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.013G155200 [exp]	0	1
AT5G39420		CDC2CAT	CDC2C (.1)		Potri.017G088200 [exp]	2.82	0.8883
AT4G22250			RING/U-box superfamily protein...		Potri.014G158900 [exp]	12.80	0.8871
AT3G54750			unknown protein		Potri.016G065600 [exp]	12.96	0.8771
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.018G064900 [exp]	14.07	0.8784
AT4G30900			DNAse I-like superfamily prote...		Potri.006G184300 [exp]	14.69	0.8464
AT4G16850			unknown protein		Potri.018G097900 [exp]	22.24	0.8747
AT1G30690			Sec14p-like phosphatidylinosit...		Potri.001G461400 [exp]	24.73	0.8374
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.007G001000 [exp]	24.81	0.8649
AT5G26660	MYB	ATMYB4, ATMYB86	myb domain protein 86 (.1)		Potri.012G084100 [exp]	29.66	0.8437
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	32.24	0.8389

Compare expression of checked genes

Potri.013G155200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.