Plant FIBer expression Database

Potri.013G155300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30395 121 / 1e-34 OFP ATOFP17, OFP17 ovate family protein 17 (.1)
AT1G06923 106 / 4e-29 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G128400
[exp]
231 / 6e-78 AT2G30395 136 / 1e-40 ovate family protein 17 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009922
[exp]
160 / 2e-50 AT2G30395 141 / 8e-43 ovate family protein 17 (.1)
Lus10024191
[exp]
155 / 2e-48 AT2G30395 137 / 2e-41 ovate family protein 17 (.1)
Lus10008588
[exp]
124 / 5e-36 AT2G30395 97 / 2e-25 ovate family protein 17 (.1)
PFAM info
Representative CDS sequence
>Potri.013G155300.1 pacid=42812402 polypeptide=Potri.013G155300.1.p locus=Potri.013G155300 ID=Potri.013G155300.1.v4.1 annot-version=v4.1
ATGAAAATGAAAGCATTAGTTGTCTTCAGATCCAAGCTTTTCAGGCCATGCAAGAAACTACTAATACTCTTCAGATTCAAGCTCAAAGGACCTGTCTTTA
TAAGAGATCTTCGACTTCATCGTCGTAGCAAAAAACGCAGAAAAGCTCCTCAAAAGAGCCGAGTTTTTACTTTTTTTCGTTCTTTTAGGAAGTCAAGAAA
GATGGACAGAGTTGCAGAACTTAGGAGCGTCTCCGAAGCAGAGCGTGAGAGAATGCTCTATCCATCTCCTCTCACACCAGCTTATATCAAGGCCAGTTTG
GCCACAAAAAGGCAAACCTTTGGTGATGAAGATGTAGAAGATGCATGCAGAAGTTTCGAGAACTATTTGGTGGAGATGATGGTTGAAGAGGGAAAAGTAA
GGGATTTAGCGGATGTGGAAGAGCTTCTGTATTGCTGGAAAAACCTCAAGTGTCCTGTCTTCATTGGTTTGGTCTGCAGATTCTACGGAGAGCTATGCAA
GGACTTGTTCTCTCCTGATGTTGACAACACCGACGTTGATAGTCCCAAATCTCCCAAATGA
AA sequence
>Potri.013G155300.1 pacid=42812402 polypeptide=Potri.013G155300.1.p locus=Potri.013G155300 ID=Potri.013G155300.1.v4.1 annot-version=v4.1
MKMKALVVFRSKLFRPCKKLLILFRFKLKGPVFIRDLRLHRRSKKRRKAPQKSRVFTFFRSFRKSRKMDRVAELRSVSEAERERMLYPSPLTPAYIKASL
ATKRQTFGDEDVEDACRSFENYLVEMMVEEGKVRDLADVEELLYCWKNLKCPVFIGLVCRFYGELCKDLFSPDVDNTDVDSPKSPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30395 OFP ATOFP17, OFP17 ovate family protein 17 (.1) Potri.013G155300
[exp]
0 1
AT3G10700 GalAK galacturonic acid kinase (.1) Potri.006G070500
[exp]
1.00 0.9655
AT5G14550 Core-2/I-branching beta-1,6-N-... Potri.001G348400
[exp]
2.00 0.9560
AT1G10630 ATARFA1F ADP-ribosylation factor A1F (.... Potri.008G100000
[exp]
3.46 0.9573 ARF1.3
AT2G28760 UXS6 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200
[exp]
4.24 0.9591 UXS1.1
AT1G73140 TBL31 Plant protein of unknown funct... Potri.001G376700
[exp]
4.47 0.9544
AT4G27270 Quinone reductase family prote... Potri.004G028900
[exp]
6.48 0.9265
AT5G11640 Thioredoxin superfamily protei... Potri.006G237600
[exp]
8.77 0.9476
AT3G06035 Glycoprotein membrane precurso... Potri.010G033400
[exp]
10.67 0.9526
AT5G02010 ATROPGEF7, ROPG... RHO guanyl-nucleotide exchange... Potri.016G104400
[exp]
10.67 0.9281
AT3G43190 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE S... Potri.018G063500
[exp]
11.40 0.9401 PtrSuSY1,Pt-SUS1.2

Potri.013G155300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.