Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30360 535 / 0 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G01820 451 / 3e-157 PKS24, CIPK14, ATSR1, SnRK3.15, ATCIPK14 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) AT4G18700 441 / 1e-152 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 426 / 8e-147 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 415 / 6e-142 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G38490 405 / 4e-139 CIPK22, SnRK3.19 SNF1-RELATED PROTEIN KINASE 3.19, CBL-interacting protein kinase 22 (.1) AT4G30960 402 / 6e-138 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45820 401 / 1e-137 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT2G34180 393 / 9e-134 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT1G30270 380 / 9e-129 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128100 [exp] 695 / 0 AT2G30360 531 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.016G133900 [exp] 504 / 2e-178 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.011G067600 [exp] 437 / 2e-150 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 428 / 6e-147 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G186200 [exp] 404 / 5e-139 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 400 / 2e-137 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.011G067500 [exp] 397 / 6e-136 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.016G133500 [exp] 396 / 3e-135 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 390 / 2e-133 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009925 [exp] 562 / 0 AT2G30360 553 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10025245 [exp] 504 / 3e-178 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10009103 [exp] 496 / 3e-175 AT2G30360 501 / 1e-176 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10022748 [exp] 461 / 2e-161 AT2G30360 491 / 3e-173 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10015275 [exp] 414 / 1e-141 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10021852 [exp] 394 / 6e-135 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 393 / 1e-134 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10014163 [exp] 387 / 7e-132 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 384 / 1e-130 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 378 / 3e-128 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.013G155600.1 pacid=42812536 polypeptide=Potri.013G155600.1.p locus=Potri.013G155600 ID=Potri.013G155600.1.v4.1 annot-version=v4.1 ATGCCGGAGATCGAAAGTGTATCGGAAAATGCCTTGTTTGGCAAGTATGAGGTTGGAAAGCTTCTCGGATGTGGAGCCTTCGCGAAGGTGTACCATGCTC GAGATGTTCAAACAGGAAAAAGTGTCGCTATCAAGATTATCAACAAGAAGAAGATCTCTAACCCTAGCTTGATGTCTAACATCAAGCGGGAGATCTCCAT CATGAGAAGGCTAAATCATCCTCATATTGTGAAACTGATCGAAGTCTTGGCTACCAAGACGAAGATTTATTTCGTTATAGAGTATGTTAAAGGTGGAGAA TTGTTTGCCAAGGTTGCTAAAGGGAGATTTAGCGAAGATCTTAGCAGGAAATATTTTCACCAGTTGATTTCTGCGGTAGGTTATTGCCATTCTCGAGGAA TTTTTCATCGTGATTTGAAACCTGAAAACTTGCTTCTTGATGAAAATGGGAGCCTGAAGGTTTCAGATTTTGGTCTAAGTGCTGTTACAGATCAGATCCG AACTGATGGACTCTTGCACACGCTTTGTGGAACTCCTGCTTATGTTGCCCCTGAGATTCTTGCAAAGAAAGGTTATGATGGTGCTAAGGTTGATTTCTGG TCTTGCGGGGTTGTTCTCTTTGTCTTAACAGCTGGTTTTTTGCCTTTCAATGATCCAAACTTGATGGCCATGTATAAAAAAATTTACAAAGGTGAATTCC GATGCCCTAAATGGATGTCCACGGATTTGAAACGATTCTTGTCTCGGCTTCTGGATACGAATCCGGAGACAAGGATCACCATTGATGAGATTCTGAAGGA TCCTTGGTTCAAGAAAGGGAAGCATAAGGAAATTAATTTCTACGACGAGGAGCTCAACAAGGCTGTTGATGAGAAAAAAGATGAGGAATTAGCTTCTACA AGCTTGAATGCCTTCGATATCATATCTTTCTCCTCCGGTTTGAACCTATCAGGGTTGTTTGATGATTCATATAATGTGGTTGATGACGGAGAAAGATTTG TGTCGACCGAATCGCCAGAGAATTTGATGAAGAAGGTTGAGGAGTTTGCAAAGGAGGAGAGGTTGAGGGTGAAGAGAAGGAAAGAATGGGGGTTGGAGAT GGAAGGGCAAAATGGTAACCTGATGATAGCGGTCGAGGTTCACCGGTTAACCGATACTTTGTTTGTTGTGGAGGCTAAGAGGAGTGGTGGTGATGCTGGA TGCTTTAAGGAGACATGGAAGAATAAGCTTAAGCCTGTGATTATGGCTACTTAG
AA sequence Show only first row Show all	>Potri.013G155600.1 pacid=42812536 polypeptide=Potri.013G155600.1.p locus=Potri.013G155600 ID=Potri.013G155600.1.v4.1 annot-version=v4.1 MPEIESVSENALFGKYEVGKLLGCGAFAKVYHARDVQTGKSVAIKIINKKKISNPSLMSNIKREISIMRRLNHPHIVKLIEVLATKTKIYFVIEYVKGGE LFAKVAKGRFSEDLSRKYFHQLISAVGYCHSRGIFHRDLKPENLLLDENGSLKVSDFGLSAVTDQIRTDGLLHTLCGTPAYVAPEILAKKGYDGAKVDFW SCGVVLFVLTAGFLPFNDPNLMAMYKKIYKGEFRCPKWMSTDLKRFLSRLLDTNPETRITIDEILKDPWFKKGKHKEINFYDEELNKAVDEKKDEELAST SLNAFDIISFSSGLNLSGLFDDSYNVVDDGERFVSTESPENLMKKVEEFAKEERLRVKRRKEWGLEMEGQNGNLMIAVEVHRLTDTLFVVEAKRSGGDAG CFKETWKNKLKPVIMAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	0	1
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	3.74	0.6977
AT5G64500			Major facilitator superfamily ...		Potri.009G081100 [exp]	4.00	0.6799
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.006G006700 [exp]	8.36	0.6046
AT3G12830			SAUR-like auxin-responsive pro...		Potri.005G096400 [exp]	10.19	0.5836
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	11.61	0.6223
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G194200 [exp]	12.64	0.6291	CESA2.6
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	18.16	0.6565
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	18.52	0.6339
AT1G78110			unknown protein		Potri.002G094700 [exp]	22.51	0.6917
AT3G51750			unknown protein		Potri.006G103600 [exp]	22.62	0.5698

Compare expression of checked genes

Potri.013G155600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.