Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58380 624 / 0 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 595 / 0 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G45820 533 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G01810 517 / 0 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT4G18700 488 / 1e-170 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 480 / 2e-167 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT4G30960 474 / 9e-166 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G29230 464 / 1e-160 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT1G30270 459 / 3e-159 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 459 / 3e-159 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G127500 [exp] 700 / 0 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.016G133500 [exp] 624 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 587 / 0 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 535 / 0 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 506 / 1e-178 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 495 / 3e-174 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.004G058300 [exp] 481 / 1e-167 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.011G067600 [exp] 475 / 1e-164 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G062800 [exp] 471 / 2e-164 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042229 [exp] 652 / 0 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 566 / 0 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10008582 [exp] 565 / 0 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 552 / 0 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10021852 [exp] 500 / 4e-176 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 500 / 6e-176 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10007283 [exp] 491 / 3e-172 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10029054 [exp] 474 / 4e-166 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10034212 [exp] 468 / 8e-164 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10015275 [exp] 472 / 1e-163 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.013G156000.3 pacid=42811076 polypeptide=Potri.013G156000.3.p locus=Potri.013G156000 ID=Potri.013G156000.3.v4.1 annot-version=v4.1 ATGGAAAATAAACCAAGTGTTTTGACAAAGAACTATGAAGTGGGGAGATTGCTTGGCCAAGGCACCTTTGCCAAGGTTTATTTTGCGAGGAGCATCAGAA CGAACCTGAGTGTAGCCATTAAAGTAATTGACAAAGAGAAGGTCTTGAAGGTTGGGCTTGTTAATCAGATCAAGAGAGAAATATCTGTAATGAGACTTGT TAGACACCCTAATATCGTGCAACTTTATGAGGTCTTGGCTACCAAAAGTAAGATTTACTTTGTAATGGAATATGCTAAAGGTGGTGAACTCTTTGACAAG GTTGCTAAAGGAAGGTTAAAGGAGGATGTTGCCCAGAAATATTTTCAACAGCTGATCAATGCAGTTGATTTCTGTCACAGCAGGGGTGTTTATCATCGTG ATATAAAGCCAGAGAATCTGTTGTTGGATGAGAATGAGAATCTGAAGATATCTGATTTTGGATTGAGTGCCCTCACTGAATCCAAGCAACAAGATGGACT ACTACACACGACTTGCGGGACACCTGCATATGTTGCTCCTGAAGTGATCAACAGGAAAGGTTATGATGGCACTAAAGCTGATATTTGGTCCTGTGGCGTG GTTTTATTTGTGTTATTGTCTGGTTATCTCCCATTTCATGATTCAAATTTGATGGAGATGTACAGGAAAATTGGCAGAGCAGAGTTCAAATGCCCTAATT GGTTTCCAACTGATGCTCGTAGGTTGTTGCGCAAGATCCTGGATCCAAACCCCAGTACAAGGATCTCCATGGCTGAGATTAAGGAAAGTTCTTGGTTTAG AAAAGGGTTGAACTCTAAACAAATTAAAACTGGAACAAAAAGCAAGGAGGTAGCTGCTTTGGATTGGAATGGTTCTGGTTCTTCTGAGAATAGCAGTGTG GCTTCTGAGGCAAAGCAAGAGTCAGCCAAACCTCCCAGCTTAAATGCTTTTGATATCATTTCCCTTTCTGCTGGATTTGATCTATCTGGATTATTCGAGG AAAATTATCAGAAGAGAGAAGCAAGATTTACTTCTATACAACCGGCTTCAGTCATCATCTCTAAACTGGAAGATATTGCTAAGCGTCAAAAGCTGAAGGT GATTAAGAAAGATGCAGGTTTGCTGAAATTGGAAGGAATGGAAGAAGGTAGAAAGGGGCCATTGTCTGTTGATGCTGAGATTTTTGAAGTGACTCCAAAT ATCCATTTTGTGGAAGTGAAGAAATCTAATGGAGATACGCTAGAATATCAGAAGATATTGGAAGAAGCTATAAGGCCTGCTCTCAACGATATTGTTTGTG TCTGGCAGGGTGAGCAAGAACTGCAACAGCAGCAGCAGCAACAATCAAATTGA
AA sequence Show only first row Show all	>Potri.013G156000.3 pacid=42811076 polypeptide=Potri.013G156000.3.p locus=Potri.013G156000 ID=Potri.013G156000.3.v4.1 annot-version=v4.1 MENKPSVLTKNYEVGRLLGQGTFAKVYFARSIRTNLSVAIKVIDKEKVLKVGLVNQIKREISVMRLVRHPNIVQLYEVLATKSKIYFVMEYAKGGELFDK VAKGRLKEDVAQKYFQQLINAVDFCHSRGVYHRDIKPENLLLDENENLKISDFGLSALTESKQQDGLLHTTCGTPAYVAPEVINRKGYDGTKADIWSCGV VLFVLLSGYLPFHDSNLMEMYRKIGRAEFKCPNWFPTDARRLLRKILDPNPSTRISMAEIKESSWFRKGLNSKQIKTGTKSKEVAALDWNGSGSSENSSV ASEAKQESAKPPSLNAFDIISLSAGFDLSGLFEENYQKREARFTSIQPASVIISKLEDIAKRQKLKVIKKDAGLLKLEGMEEGRKGPLSVDAEIFEVTPN IHFVEVKKSNGDTLEYQKILEEAIRPALNDIVCVWQGEQELQQQQQQQSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G156000 [exp]	0	1
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Potri.001G441180 [exp]	7.74	0.6924
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.001G024300 [exp]	16.06	0.7173	ABA2.1
AT4G17670			Protein of unknown function (D...		Potri.003G085700 [exp]	20.68	0.7266
AT3G14720		ATMPK19	ARABIDOPSIS THALIANA MAP KINAS...		Potri.001G381300 [exp]	28.19	0.6105	Pt-TDY1.2
AT2G36350			Protein kinase superfamily pro...		Potri.009G146700 [exp]	39.33	0.6304
AT5G42370			Calcineurin-like metallo-phosp...		Potri.005G259700 [exp]	45.69	0.6222
AT5G66290			unknown protein		Potri.005G116300 [exp]	60.39	0.6370
AT5G54940			Translation initiation factor ...		Potri.010G151700 [exp]	63.06	0.6284
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	75.87	0.6456
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.010G141300 [exp]	93.46	0.5921

Compare expression of checked genes

Potri.013G156000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.