Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) AT5G58400 385 / 7e-134 Peroxidase superfamily protein (.1) AT5G58390 369 / 1e-127 Peroxidase superfamily protein (.1) AT1G14550 350 / 4e-120 Peroxidase superfamily protein (.1) AT1G14540 337 / 5e-115 Peroxidase superfamily protein (.1) AT1G44970 312 / 8e-105 Peroxidase superfamily protein (.1) AT4G36430 309 / 6e-104 Peroxidase superfamily protein (.1) AT2G18140 309 / 8e-104 Peroxidase superfamily protein (.1) AT5G66390 309 / 9e-104 Peroxidase superfamily protein (.1) AT2G18150 305 / 3e-102 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156500 [exp] 491 / 6e-176 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 426 / 3e-150 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 394 / 1e-137 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 393 / 5e-137 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 390 / 3e-136 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 387 / 1e-134 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 387 / 1e-134 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 373 / 4e-129 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 372 / 6e-129 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034207 [exp] 404 / 3e-141 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10030149 [exp] 399 / 8e-139 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10030148 [exp] 396 / 1e-138 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10009932 [exp] 400 / 8e-138 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10009934 [exp] 371 / 1e-128 AT5G05340 372 / 5e-130 Peroxidase superfamily protein (.1) Lus10024209 [exp] 370 / 8e-128 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10009898 [exp] 365 / 8e-126 AT1G14550 448 / 1e-159 Peroxidase superfamily protein (.1) Lus10009902 [exp] 364 / 9e-126 AT1G14550 441 / 8e-157 Peroxidase superfamily protein (.1) Lus10006534 [exp] 359 / 1e-123 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10009900 [exp] 356 / 2e-122 AT1G14550 436 / 1e-154 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.013G156400.2 pacid=42810874 polypeptide=Potri.013G156400.2.p locus=Potri.013G156400 ID=Potri.013G156400.2.v4.1 annot-version=v4.1 ATGCCATGCTCTTGTCAAGAAAAATCCTCCATTAAACCCCATATATACCTTGATATTTCCTACAATCTTGTACTCAAGACACTCCTAGCTTTCCTTAATT CATTAAAAGAAAGAAGCAAAATGGCTAGAACTAGCAGTTCTAGCACTTCCTTTTCTTCTTACATGGTCTCTGTTACATTAGCTTTGCTTTTGATCTACAC AAGTAGCTCCTCAGCTCACCTCTCTACAGACTTTTATGATAAAAGTTGCCCACAACTCTTCGGAACAGTGAAATCTGTTGTTCAATCTGCAATAGCGAAA GAACGCCGGATGGGTGCTTCTCTTGTTCGTTTGTTCTTTCATGATTGTTTTGTCAAAGGTTGTGATGCGTCTATACTTCTGGAAGACACTGCCACTTTCA AGGGAGAACAAGGTGCAGGTCCAAATAATAATTCTGTGAGGGGATACAATGTCGTCGCCAAAATCAAGTCTAAGTTGGAGAAAGTCTGTCCAGGTATAGT TTCATGTGCTGATATCGTGGTCATTGCTGCCCGTGATTCCACTGTTCTTCTTGGAGGTCCATATTGGAAGGTAAAACTTGGACGGAGAGATTCAAAGACA GCTAACATGAATGCTGCCAGTAAGAGCCTCCCTTCTGACACTTCAACTGTTAGCCAACTCATCAAACGATTTAAATCTAAAGGCCTCTCTGCTACGGACA TGGTTGCCTTATCAGGATCCCACACAATTGGGCAAACTAAGTGCAAGACTTTTAGAGCTCGAATATACAACGAGACCAATATTGACAAATCATTTGCTAC CATGAGGCAAAAGATGTGCCCGCTCACTACAGGAGATGACAATTTGGCACCTCTAGATTTCCAAACTCCTAATGTCTTTGACAATAATTATTACAAAAAC CTCATCCACAAAAAGGGTCTCCTCCACTCTGATCAAGTGCTGTTCAGTGGTGAATCTACTGATTCGTTGGTTAGAACTTACAGTAATAATCCTGATATCT TCTTTTCTGACTTTGCTGCAGCAATGGTTAAGATGGGAGATATAGATCCCCGTACTGGAACTCGCGGTGAAATTAGAAAGAAATGTAGCTGTCCAAATTA A
AA sequence Show only first row Show all	>Potri.013G156400.2 pacid=42810874 polypeptide=Potri.013G156400.2.p locus=Potri.013G156400 ID=Potri.013G156400.2.v4.1 annot-version=v4.1 MPCSCQEKSSIKPHIYLDISYNLVLKTLLAFLNSLKERSKMARTSSSSTSFSSYMVSVTLALLLIYTSSSSAHLSTDFYDKSCPQLFGTVKSVVQSAIAK ERRMGASLVRLFFHDCFVKGCDASILLEDTATFKGEQGAGPNNNSVRGYNVVAKIKSKLEKVCPGIVSCADIVVIAARDSTVLLGGPYWKVKLGRRDSKT ANMNAASKSLPSDTSTVSQLIKRFKSKGLSATDMVALSGSHTIGQTKCKTFRARIYNETNIDKSFATMRQKMCPLTTGDDNLAPLDFQTPNVFDNNYYKN LIHKKGLLHSDQVLFSGESTDSLVRTYSNNPDIFFSDFAAAMVKMGDIDPRTGTRGEIRKKCSCPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05340			Peroxidase superfamily protein...		Potri.013G156400 [exp]	0	1
					Potri.017G111000 [exp]	2.00	0.9733
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008175 [exp]	2.82	0.9672
AT1G07650			Leucine-rich repeat transmembr...		Potri.019G007900 [exp]	3.87	0.9665
AT4G08850			Leucine-rich repeat receptor-l...		Potri.002G008100 [exp]	4.58	0.9531
					Potri.001G131600 [exp]	6.63	0.9599
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G025400 [exp]	9.16	0.9549
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	9.74	0.9582
AT1G02260			Divalent ion symporter (.1)		Potri.017G141800 [exp]	10.95	0.9414
AT5G24010			Protein kinase superfamily pro...		Potri.005G144100 [exp]	12.40	0.9417
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Potri.015G059800 [exp]	12.64	0.9373

Compare expression of checked genes

Potri.013G156400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.