Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RIP1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 345 / 8e-119 Peroxidase superfamily protein (.1) AT2G18140 308 / 4e-104 Peroxidase superfamily protein (.1) AT5G58400 308 / 4e-104 Peroxidase superfamily protein (.1) AT2G18150 308 / 4e-104 Peroxidase superfamily protein (.1) AT4G36430 303 / 4e-102 Peroxidase superfamily protein (.1) AT1G44970 302 / 1e-101 Peroxidase superfamily protein (.1) AT5G58390 300 / 3e-101 Peroxidase superfamily protein (.1) AT1G14550 296 / 2e-99 Peroxidase superfamily protein (.1) AT5G06720 296 / 3e-99 ATPA2 peroxidase 2 (.1) AT5G66390 294 / 1e-98 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107000 [exp] 380 / 1e-132 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 372 / 1e-129 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 356 / 2e-123 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 355 / 6e-123 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 353 / 6e-122 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 340 / 4e-117 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 328 / 4e-112 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 327 / 3e-111 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 320 / 5e-109 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009936 [exp] 433 / 1e-153 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10009935 [exp] 431 / 7e-153 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10030145 [exp] 422 / 8e-149 AT5G05340 353 / 2e-121 Peroxidase superfamily protein (.1) Lus10008581 [exp] 410 / 9e-145 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10025255 [exp] 361 / 5e-125 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006534 [exp] 353 / 7e-122 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 352 / 3e-120 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10034207 [exp] 343 / 5e-118 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 337 / 6e-116 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 334 / 1e-114 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.013G156800.1 pacid=42812492 polypeptide=Potri.013G156800.1.p locus=Potri.013G156800 ID=Potri.013G156800.1.v4.1 annot-version=v4.1 ATGGCTGCTATACAATCTTTCTTGTATTTTGCAACATTAGTGGCTATTTTGATCCCTGTAAGTGCACAGTTGACACCTGACTTCTACGACAAAGTGTGCC CTCAAGCCCTGCCAATCATTAGAAAAATTACTAAGCAGGCAATCCGGCGTGAGCCACGTATGGGAGCTTCGCTGCTTCGAATGCATTTTCATGACTGCTT TGTCAATGGTTGTGATGGATCAGTGCTTCTAGATGACACAGCCAACTTCACTGGAGAGAAGACAGCCCTTCCCAATTTGAATTCACTCAGGGGCTTTGAA GTGGTTGACCAAATTAAATCAGCTATTAACCAAGCTTGCTCTGCCAATGTGGTGTCATGTGCTGACATTTTAGCTGTCGCAGCTCGCGACTCTGTGAACC TTCTGGGAGGTCCTGCGTACAAGGTGTTACTAGGCAGAAGAGATTCAAGAACTGCAAGCAAAAACGATGCAAACACCAATCTTCCTCCCCCGTTTTTTAA CTTCTCACAACTTCTCTCTAACTTCCAATCTCATGGGCTAAACCTGACGGACCTAGTTGTCCTCTCAGCAGGCCACACCATTGGACTTGCTCGGTGCACC ACTTTCCGCGACAGGATTTACAACGACACCAATATAAACTACAAATTTGCTGCTTCCTTGAAATATAGCTGCCCAAGAACTGGAGGGGACAATAACACGA AGCCTTTTGATTCAACCACAACAAGATTTGATGCACAATATTTCAGGGATTTGCTTGCCAAAAAAGGTCTCCTACATTCTGACCAAGAGCTGTTTAAGGG TGATGGTAGTGGTAGCGATTCGCTAGTGAAGTATTATGGTTACATTAATCCAGACAGATTTCTGACAGACTTCTCTGCTTCCATGGTCAAGATGGGAAAT ATGAAGCCCCTCACTGGAACTAATGGAGAGATCAGAATGAATTGCAGAAAAGTTAATAACTAG
AA sequence Show only first row Show all	>Potri.013G156800.1 pacid=42812492 polypeptide=Potri.013G156800.1.p locus=Potri.013G156800 ID=Potri.013G156800.1.v4.1 annot-version=v4.1 MAAIQSFLYFATLVAILIPVSAQLTPDFYDKVCPQALPIIRKITKQAIRREPRMGASLLRMHFHDCFVNGCDGSVLLDDTANFTGEKTALPNLNSLRGFE VVDQIKSAINQACSANVVSCADILAVAARDSVNLLGGPAYKVLLGRRDSRTASKNDANTNLPPPFFNFSQLLSNFQSHGLNLTDLVVLSAGHTIGLARCT TFRDRIYNDTNINYKFAASLKYSCPRTGGDNNTKPFDSTTTRFDAQYFRDLLAKKGLLHSDQELFKGDGSGSDSLVKYYGYINPDRFLTDFSASMVKMGN MKPLTGTNGEIRMNCRKVNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05340			Peroxidase superfamily protein...		Potri.013G156800 [exp]	0	1	RIP1.3
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G276500 [exp]	2.82	0.9459
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.001G312600 [exp]	8.48	0.9393
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022000 [exp]	10.95	0.9254
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	11.31	0.9347
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.002G017900 [exp]	11.40	0.8956	ATEXPA11.2
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G164900 [exp]	11.83	0.9233
AT5G37800	bHLH	ATRSL1, bHLH086	ARABIDOPSIS THALIANA RHD SIX-L...		Potri.017G126800 [exp]	12.64	0.9288
AT5G25460			Protein of unknown function, D...		Potri.001G174400 [exp]	14.38	0.8971
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G315300 [exp]	15.23	0.9220
AT2G45750			S-adenosyl-L-methionine-depend...		Potri.015G139000 [exp]	15.90	0.9164

Compare expression of checked genes

Potri.013G156800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.