Plant FIBer expression Database

Potri.013G157250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G157250.1 pacid=42812088 polypeptide=Potri.013G157250.1.p locus=Potri.013G157250 ID=Potri.013G157250.1.v4.1 annot-version=v4.1
ATGCCTTCCCCATCGCCTTCGTCCCTTCGTTTCTGTCTCCAGTTTCTTCTCCTCCAGCGGTGCAACCCTTTCTTCCATAGGCACTGTGAGCTCTGGAAAG
CAATAACAACACCTCCTCCATCTGCACCAGCGGCGTTCACACCAGTTAGACCAACGATGCAACTTCTTCTTCGCCAGCACAATAATCTCTTCACTGGCGC
TTCTCAACAGCCCAGTCGTCTTGCACCGGCTACAACCGTGGGGGAAAATGAGACATGGGCAGCAACCAGTCGTCTCCCACTTCGCCTCCAGCCGCTGCCT
CGCACGTCGCCTCTGGCAGTCACAAAGTTCATTTCATCCCTTCTCAACTTCAACTTGCAGATGTCTTCACAAAAGGGTTACCAGTTGACCGTTTTGAATG
TCTTGTTTCCAAACTCGTCACCTATTCGGTGTCTAGATTGCGAGGGGATGTTAGGCAATTATCGTAATTATGATTAG
AA sequence
>Potri.013G157250.1 pacid=42812088 polypeptide=Potri.013G157250.1.p locus=Potri.013G157250 ID=Potri.013G157250.1.v4.1 annot-version=v4.1
MPSPSPSSLRFCLQFLLLQRCNPFFHRHCELWKAITTPPPSAPAAFTPVRPTMQLLLRQHNNLFTGASQQPSRLAPATTVGENETWAATSRLPLRLQPLP
RTSPLAVTKFISSLLNFNLQMSSQKGYQLTVLNVLFPNSSPIRCLDCEGMLGNYRNYD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.013G157250
[exp]
0 1
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.002G094800
[exp]
13.96 0.7792
AT3G25780 AOC3, AOC2 allene oxide cyclase 3 (.1) Potri.004G102500
[exp]
23.62 0.7680 MANG.1
AT4G21350 PUB8, B80 plant U-box 8 (.1) Potri.004G028800
[exp]
23.87 0.7548
AT4G31780 UGT81A1, EMB279... UDP-glycosyl transferase 81A1,... Potri.006G266500
[exp]
32.31 0.7528
AT5G34930 arogenate dehydrogenase (.1) Potri.006G062600
[exp]
36.18 0.7475
Potri.002G021050
[exp]
48.37 0.7504
AT4G28300 Protein of unknown function (D... Potri.013G131600
[exp]
60.00 0.7432
AT1G58120 unknown protein Potri.002G104500
[exp]
61.59 0.7437
AT5G28237 Pyridoxal-5'-phosphate-depende... Potri.011G024900
[exp]
61.83 0.7424
AT2G29110 ATGLR2.8 glutamate receptor 2.8 (.1) Potri.006G172801
[exp]
70.09 0.7397

Potri.013G157250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.