Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05240 103 / 6e-24 Uncharacterised conserved protein (UCP030365) (.1) AT2G40630 59 / 4e-09 Uncharacterised conserved protein (UCP030365) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G058200 [exp] 102 / 2e-23 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1) Potri.013G091100 [exp] 60 / 1e-09 AT5G05240 259 / 3e-80 Uncharacterised conserved protein (UCP030365) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029030 [exp] 102 / 2e-23 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10034236 [exp] 102 / 2e-23 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10030527 [exp] 54 / 8e-08 AT2G40630 169 / 6e-48 Uncharacterised conserved protein (UCP030365) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G157700.1 pacid=42810744 polypeptide=Potri.013G157700.1.p locus=Potri.013G157700 ID=Potri.013G157700.1.v4.1 annot-version=v4.1 ATGCTAAAGACTGCAATGAGCCCGGCACGCAGTTGTTCAGATCATTGTGCTGCTGGTTCGATTGAGGAAAAGGATGCTATGAGAGTTTGGCTGGAATTGA AACAAAATGGATTTCTCTCGCCTTCGCCATTGTCTCTGTCTGCCTCAAAGCCAATGCCAAAGCCAAAGCCTGCTCCGATGCCAAATAAGAAGCGAGAGAG ACATAGAAATGCTGGGTTTAGTGAAAAACCGGAGATTGCAAAGGTGCGGCGAGTTGATGAGTTGACTAAGGTTGCTGCGTCTGCTTCTGGATTGCTCAAG AAAATTAATCCAGGGACCACACCTTCCGTTGGCATGCTGCCAACGCCAAAAAAGCACAGTGAGATGCGTAGGATTGGTGGACCAAAGGGATTATTGAAGG TTTTAAAGGTAGAACCGACTAGCATGTGCTCTCGGATCTCTCCACCATGTGGGTTGCTTAATGAGTTCAATCCAGGGATCATAAATCGGATACGAAGCCG TAAACAGGTATTTTCAGTGATTCGGGATTTTGTTAGAAGAGATACAATAGGAAATATTGACATCCCAAGTAAGCAGGAAAAGAGATCCGGGGAAAATGAT GTGATTGGATGCCCAAATAGTTCATCAGGAAGTGACCAACTGGGACTATGTTCAAAGGGCCGAAGTGACCATTTGTGTGTGAAAACAGAATATGATGAAG AGGTTGGTGATTTGGGGATAGCTGTGAGAAGGGCAGACAATGAAGATGACAAAGATGAATTGAAGTCATCCCTATCTTCAGTTACAGCATCTGAAAATGC AAGCAGTTCTGTTCTTGATGAGGTGTCAGCAAGCACAGCAAGGGGTTCTTCTCTTTCTCTAGAAGATGCTACTGCAGCTTCTCAATGGTTGCAATGTCTT CGCCACGACATCACATGGCGTCTTGAAGCATCGACGCATGGTAGAACGAGGATTCAAAATGCAATCCAGAGAGAATTGCCTGCCCTTATGCTCAAAGAAT TTTCAGTTGACCAAGAAACTGATTTCTTGGCTGCCAAAAGGTTTGTTTCTTTAAGCATGGATGTCCATAAAGCAAAGTGGATAAATCAGTTTGACCGGAT GGATAAGACACCCAATGAAGAGGCGGATCGACTGGTCGGTAATTAA
AA sequence Show only first row Show all	>Potri.013G157700.1 pacid=42810744 polypeptide=Potri.013G157700.1.p locus=Potri.013G157700 ID=Potri.013G157700.1.v4.1 annot-version=v4.1 MLKTAMSPARSCSDHCAAGSIEEKDAMRVWLELKQNGFLSPSPLSLSASKPMPKPKPAPMPNKKRERHRNAGFSEKPEIAKVRRVDELTKVAASASGLLK KINPGTTPSVGMLPTPKKHSEMRRIGGPKGLLKVLKVEPTSMCSRISPPCGLLNEFNPGIINRIRSRKQVFSVIRDFVRRDTIGNIDIPSKQEKRSGEND VIGCPNSSSGSDQLGLCSKGRSDHLCVKTEYDEEVGDLGIAVRRADNEDDKDELKSSLSSVTASENASSSVLDEVSASTARGSSLSLEDATAASQWLQCL RHDITWRLEASTHGRTRIQNAIQRELPALMLKEFSVDQETDFLAAKRFVSLSMDVHKAKWINQFDRMDKTPNEEADRLVGN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05240			Uncharacterised conserved prot...		Potri.013G157700 [exp]	0	1
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	3.87	0.9275
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	6.78	0.9038
AT5G52800			DNA primases (.1.2.3)		Potri.017G148000 [exp]	7.34	0.9023
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	12.00	0.9005
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	13.41	0.8855
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	14.49	0.8948
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	15.49	0.8926
AT5G26680			5'-3' exonuclease family prote...		Potri.013G000700 [exp]	15.87	0.7546
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	18.02	0.8758
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	18.33	0.8592

Compare expression of checked genes

Potri.013G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.