Plant FIBer expression Database

Potri.013G157800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30480 147 / 1e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019109
[exp]
138 / 1e-35 AT2G30480 92 / 3e-20 unknown protein
Lus10034450
[exp]
104 / 2e-25 AT2G30480 81 / 6e-18 unknown protein
Lus10034451
[exp]
99 / 4e-22 ND /
Lus10019108
[exp]
63 / 3e-10 ND /
PFAM info
Representative CDS sequence
>Potri.013G157800.13 pacid=42810856 polypeptide=Potri.013G157800.13.p locus=Potri.013G157800 ID=Potri.013G157800.13.v4.1 annot-version=v4.1
ATGTTGCAATGGATGGGAGGATCAAGAAGGAAAGTCACTACTTCAAGGAGATCTACTCAGAAGAGGCAAAAGCAGTATTTTGAACAAAGGAGAAGGAAAC
AGCATCAGCAGGCAGCTGGGTTAGACAGCTTTGAAGAAGGGGTTAACATTCGAGGGGAGAATTGCAGAGAACATCATCGATCATTGGATGTTCTTAGTTT
GCAGAACTGGTCAACAATTGCTAAAGACTGCACGTCTACTTGCCACCCTGGAAGGGAAGATGCAAAGGTCAATGCTTCAACAGTCAACTCCCATATCTTC
AAGGATCCACCAATAATTCGAGCCAACCCTATCGGTCCTCTGCAGTCTCCTGAAATCATGGAAACAAGAACTCTATCAGGCTACCAACCGGAGACTGTAT
CACCGAAGAAGGTTCTGTTTAGCTCTTCAAATAATCGCAGCAAAGCTTTCAGTGGAACCAGCAGCAAAAACAAAATGGATCCTTGCAAGATGACAACTCA
GCAATCATCATCTGTTTTTGATTTGCTTGCTGATGATGAACCAAATGGAAAGTCAGATGGAAGTCCAGCACGTGAAGCTCATGTTGCATTTTCAGTTGAA
GGTTTGGGCAAAGTGGGAGCAGAAACACCCCCCTACTCACCGCGACAACCTGACAGATATGTTTCCTATGGCTGCCCCTCACCATTGAAGGCTGCAAGGC
AAATAAGCTCATCAAAGAACCTTGATTATGTTCTGAATGACCTTGAAGTTGAAGTGGATGCAATAATGCAACATGTTGACATGCCACTAAGAGGCCATCC
TTCGGAATTTTCAATGGAGATTGAGGATTCGTTTTGCAAGCTAAATAATAATTTATCTACCATCGCAGAAAGTGTACAACTTGATGGCCATGGTAGAATG
AGGAACTCATTTGGTGAAACTGAGAATAACGATGATACATGGGGTGCAAGGTGTAGGTCATGGGATGCCAATTTTCTTGATAAGAGGGGATTTGATATTT
CTTGGAATAGCTGGCCATATTCTATGGATGGTAATTCTGCTGAATTTCTGAAATACGGAAATGATAGATTGCCAGATGATGCTTTCGAAGGTTGTCATCT
GCTGAAGAAAAGGGATTCTATAATTGCCAAGGAAGCATTCAATGTCTTAGATTCACCCTCTCTGAAGCATCGAACACCTGAAACTGGTTTTGATTTCATG
ATTTCTGAAAGGGCGGCAAGGAAGCCTTCACTGCGAACGAATTTTGGTTTTGGAGATACAACCATCCAACCTGATTGGTCTTGCTTTATCACAGAAGATG
CTAGAGACAACCAGAGCTTGTTGAGTGAAGAGTCGAGCTCGTCCACTGCAGAGGCAGTGAGGGACAAGGTGACAGATATTTCGCCATCAAACTCTAGAGC
AAGACGCAGCCAAAGGCATCAAAATGCTTCTGGTTTCCCTGAAAACAATTGCAGAACTAAAAGCATTTTTCTCAAGGGAAGACAATTCAAAAATAGGGAA
GAAATTCAGAAAGGAAATAATGTATTTGGATCAGGAAAATCCACACAGACCCCAATGCTATCAGAGTCAAGCAACTTAGATTGTCCTTTCCAGGAGAAAA
TAGGGTCACGTAGGAGTTGGATGTTTAAAGAAGGATATGGGTCAGCAGATATGAATATGGGTTTCAGTTCACCATGCCAAACCTCAGAAACAAAGCATCC
TTTGTCAGGCTCCAAGCCTTGGACTGAAGATACTTTTGATGCCTTTGTCCTTGAACCACAAATTGATGCCAAATTCTCTTTTGACACCTCCAAACATGGT
GGCTCTGTTAAACATTCACCATCTGACAGTTTTATCTCTGAAAAGTCCGCCTTCTGCCAAAAATCTAGTAGTATGCACGCTCATGATTCCCCTATGTTCT
CGAAGGTTGAGTTTGGGGCAACCAGGGCAGATTTTACTCGGGATCCTCCAGATTTTGAGTTCAAAGGCAACCCTCCAGATTTTTCATCAGAAGATGCTGC
TTCTCATGGAGAGAAGTTGGTTTTGGAGTTATCAGCAAAGGAAAGTGTAAGCAAAGAAAAGAAAAATAGATCAAAATTTCAGCAAACCAATTATGAAAAA
GTCGAGACATGGAACGGCCATGTTGGAAACAACATGAAGCCAATGGATGCATTAGAATCTGTGGATAATGGTCCTGACCGCAAGGATGCAAAAGATGAAC
CTTTGGAGACATCATCATCTGTGAAGATCCCTAACAAATCTGAAAGCAGTGTTGATAAAAAAGAATATCACCATGATGCTGAAGTTTCTCCTCCATGCCC
AAAGGGGAATAAAGAAAATGAAGGGCCTGAAGACAGAAAAATAAGCAGAGATGGTAATCGTCTTGATTCATCTCCCCCAGTGATGATGCTAAAAAGCTAC
GTTCTCCAGCTTCTTTGTGTGCAGAAGGCACCAAGGGAGGCTTCTGTACAGTCACCTTAA
AA sequence
>Potri.013G157800.13 pacid=42810856 polypeptide=Potri.013G157800.13.p locus=Potri.013G157800 ID=Potri.013G157800.13.v4.1 annot-version=v4.1
MLQWMGGSRRKVTTSRRSTQKRQKQYFEQRRRKQHQQAAGLDSFEEGVNIRGENCREHHRSLDVLSLQNWSTIAKDCTSTCHPGREDAKVNASTVNSHIF
KDPPIIRANPIGPLQSPEIMETRTLSGYQPETVSPKKVLFSSSNNRSKAFSGTSSKNKMDPCKMTTQQSSSVFDLLADDEPNGKSDGSPAREAHVAFSVE
GLGKVGAETPPYSPRQPDRYVSYGCPSPLKAARQISSSKNLDYVLNDLEVEVDAIMQHVDMPLRGHPSEFSMEIEDSFCKLNNNLSTIAESVQLDGHGRM
RNSFGETENNDDTWGARCRSWDANFLDKRGFDISWNSWPYSMDGNSAEFLKYGNDRLPDDAFEGCHLLKKRDSIIAKEAFNVLDSPSLKHRTPETGFDFM
ISERAARKPSLRTNFGFGDTTIQPDWSCFITEDARDNQSLLSEESSSSTAEAVRDKVTDISPSNSRARRSQRHQNASGFPENNCRTKSIFLKGRQFKNRE
EIQKGNNVFGSGKSTQTPMLSESSNLDCPFQEKIGSRRSWMFKEGYGSADMNMGFSSPCQTSETKHPLSGSKPWTEDTFDAFVLEPQIDAKFSFDTSKHG
GSVKHSPSDSFISEKSAFCQKSSSMHAHDSPMFSKVEFGATRADFTRDPPDFEFKGNPPDFSSEDAASHGEKLVLELSAKESVSKEKKNRSKFQQTNYEK
VETWNGHVGNNMKPMDALESVDNGPDRKDAKDEPLETSSSVKIPNKSESSVDKKEYHHDAEVSPPCPKGNKENEGPEDRKISRDGNRLDSSPPVMMLKSY
VLQLLCVQKAPREASVQSP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30480 unknown protein Potri.013G157800
[exp]
0 1
AT5G05830 RING/FYVE/PHD zinc finger supe... Potri.006G094000
[exp]
1.00 0.8910
AT1G13570 F-box/RNI-like superfamily pro... Potri.002G132400
[exp]
4.24 0.8616
Potri.018G104600
[exp]
8.18 0.8087
AT4G03390 SRF3 STRUBBELIG-receptor family 3 (... Potri.019G103900
[exp]
10.58 0.8403
AT1G80490 TPR1 TOPLESS-related 1 (.1.2) Potri.003G030000
[exp]
14.28 0.7975
AT3G49400 Transducin/WD40 repeat-like su... Potri.012G021900
[exp]
14.76 0.7645
AT2G07050 CAS1 cycloartenol synthase 1 (.1) Potri.007G002200
[exp]
25.63 0.8061
AT4G23660 ATPPT1 polyprenyltransferase 1 (.1.2.... Potri.005G093700
[exp]
26.72 0.8398
AT4G27220 NB-ARC domain-containing disea... Potri.001G446332
[exp]
30.39 0.8477
AT4G27190 NB-ARC domain-containing disea... Potri.001G419800
[exp]
31.87 0.8456

Potri.013G157800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.