Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	C4H2,CYP73.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 826 / 0 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT2G40890 243 / 3e-74 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT5G67310 217 / 3e-64 CYP81G1 "cytochrome P450, family 81, subfamily G, polypeptide 1", cytochrome P450, family 81, subfamily G, polypeptide 1 (.1) AT4G13770 214 / 3e-63 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26230 209 / 2e-61 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G26280 209 / 2e-61 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT1G74550 208 / 4e-61 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT3G48280 206 / 2e-60 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT4G22710 206 / 7e-60 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G22690 204 / 3e-59 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130700 [exp] 900 / 0 AT2G30490 812 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.018G146100 [exp] 615 / 0 AT2G30490 622 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.016G031000 [exp] 233 / 3e-70 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 230 / 3e-69 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G033300 [exp] 226 / 2e-67 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.012G089900 [exp] 220 / 2e-65 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.015G086000 [exp] 220 / 2e-65 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 219 / 5e-65 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.007G083500 [exp] 218 / 6e-65 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034449 [exp] 880 / 0 AT2G30490 882 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10035011 [exp] 834 / 0 AT2G30490 867 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10021671 [exp] 733 / 0 AT2G30490 778 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10027598 [exp] 603 / 0 AT2G30490 630 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019110 [exp] 516 / 0 AT2G30490 555 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10033524 [exp] 226 / 2e-67 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 225 / 3e-67 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10019457 [exp] 223 / 1e-66 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 221 / 9e-66 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 211 / 5e-62 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.013G157900.1 pacid=42812028 polypeptide=Potri.013G157900.1.p locus=Potri.013G157900 ID=Potri.013G157900.1.v4.1 annot-version=v4.1 ATGGATCTCCTCCTCCTGGAGAAGACCCTCTTGGGTTCTTTCGTTGCCATTCTCGTTGCCATTCTCGTTTCTAAACTACGTGGCAAACGTTTTAAACTCC CTCCAGGTCCTATACCTGTCCCCGTGTTTGGAAACTGGCTTCAAGTTGGTGATGATTTGAACCACCGTAACCTCACCGACTTAGCCAAGAAATTCGGTGA CATCTTCCTCCTTCGTATGGGCCAACGTAACCTTGTTGTCGTCTCTTCTCCTGACCTATCCAAAGAGGTTCTGCACACACAAGGTGTTGAGTTCGGGTCG AGAACAAGAAATGTTGTTTTTGATATCTTTACTGGAAAGGGACAAGACATGGTGTTCACTGTCTACGGTGAACATTGGAGGAAGATGAGGAGAATCATGA CTGTCCCTTTCTTTACAAACAAGGTTGTCCAACAATATAGGTATGGCTGGGAGGAGGAAGCCGCTCAAGTTGTCGAGGATGTTAAGAAAAACCCTGAGGC TGCAACCAATGGGATTGTTTTGAGGAGGAGATTGCAACTCATGATGTATAATAATATGTACAGGATTATGTTTGATAGGAGATTTGAGAGCGAAGACGAT CCTTTGTTTAACAAGCTCAAGGCTTTGAATGGTGAGAGGAGCAGATTGGCTCAGAGTTTTGATTATAATTATGGTGATTTCATCCCCATTTTGAGACCTT TCTTGAGAGGTTACTTGAAGATCTGCCAGGAGGTTAAGGAGAGAAGGTTGCAACTCTTCAAGGACTACTTTGTCGATGAGAGGAAGAAACTTGCAAGCAC AAAGAACATGAACAATGAAGGGTTGAAGTGCGCCATAGACCATATCCTCGATGCTCAAAAGAAAGGAGAGATCAACGAGGACAACGTTCTTTACATTGTT GAGAACATCAACGTCGCTGCAATTGAGACAACACTATGGTCGATCGAGTGGGGAATTGCTGAGCTTGTGAACCATCCTGAAATCCAGAAGAAGTTGCGCC ATGAGCTCGATACCTTGCTTGGACCTGGTCACCAAATCACCGAGCCTGACACCTACAAGCTCCCTTACCTTAATGCTGTAATCAAAGAGACCCTCCGACT TAGGATGGCAATTCCTCTACTTGTCCCACACATGAACCTTCATGATGCCAAGCTTGGAGGCTTCGACATTCCAGCTGAGAGCAAGATCCTGGTCAATGCC TGGTGGCTCGCCAACAACCCTGCCCACTGGAAAAACCCTGAAGAATTCAGGCCAGAGAGGTTCTTGGAAGAGGAGGCCAAGGTTGAGGCCAATGGCAATG ATTTCAGGTACCTTCCATTTGGAGTTGGGAGAAGGAGCTGTCCTGGAATTATTCTTGCATTGCCAATTCTTGGCATTACTCTGGGACGTCTGGTACAGAA TTTCGAGCTCTTGCCTCCTCCCGGACAGTCAAAGATCGACACCGCAGAGAAAGGTGGACAGTTCAGTTTGCACATATTGAAGCACTCCACTATTGTTGCA AAGCCAAGGTCCTTTTAA
AA sequence Show only first row Show all	>Potri.013G157900.1 pacid=42812028 polypeptide=Potri.013G157900.1.p locus=Potri.013G157900 ID=Potri.013G157900.1.v4.1 annot-version=v4.1 MDLLLLEKTLLGSFVAILVAILVSKLRGKRFKLPPGPIPVPVFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPDLSKEVLHTQGVEFGS RTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWEEEAAQVVEDVKKNPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESEDD PLFNKLKALNGERSRLAQSFDYNYGDFIPILRPFLRGYLKICQEVKERRLQLFKDYFVDERKKLASTKNMNNEGLKCAIDHILDAQKKGEINEDNVLYIV ENINVAAIETTLWSIEWGIAELVNHPEIQKKLRHELDTLLGPGHQITEPDTYKLPYLNAVIKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNA WWLANNPAHWKNPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQSKIDTAEKGGQFSLHILKHSTIVA KPRSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	0	1	C4H2,CYP73.2
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	1.73	0.9515
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	2.44	0.9435	CAld5H/F5H4,Pt-FAH1.4
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	4.00	0.9489
AT1G10720			BSD domain-containing protein ...		Potri.014G014200 [exp]	5.47	0.9411
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	6.00	0.9312
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	6.92	0.9434
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.010G224200 [exp]	7.41	0.9306
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	7.48	0.9297
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	8.06	0.9301
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	10.67	0.9409

Compare expression of checked genes

Potri.013G157900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.