Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-P68.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55150 322 / 4e-104 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 312 / 4e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G58570 314 / 5e-99 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 308 / 4e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 306 / 2e-96 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 305 / 4e-94 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G47330 298 / 5e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 292 / 5e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 283 / 2e-87 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT5G51280 280 / 9e-87 DEAD-box protein abstrakt, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130900 [exp] 867 / 0 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G007900 [exp] 319 / 2e-101 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 309 / 7e-99 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G061900 [exp] 310 / 5e-98 AT2G42520 786 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G217800 [exp] 310 / 1e-97 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G196000 [exp] 308 / 2e-97 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G084600 [exp] 304 / 9e-96 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G257400 [exp] 315 / 3e-95 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.015G083000 [exp] 299 / 9e-94 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030075 [exp] 327 / 6e-105 AT3G58570 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015977 [exp] 316 / 1e-101 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000849 [exp] 317 / 4e-101 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 315 / 7e-101 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 314 / 8e-101 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015976 [exp] 314 / 1e-99 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016207 [exp] 311 / 3e-98 AT2G42520 850 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 307 / 7e-97 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019484 [exp] 304 / 1e-95 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037527 [exp] 296 / 9e-91 AT2G47330 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.013G158000.1 pacid=42811130 polypeptide=Potri.013G158000.1.p locus=Potri.013G158000 ID=Potri.013G158000.1.v4.1 annot-version=v4.1 ATGTCGTATATTCCTCCTCACCTGAGAAACTCAAGCTCAAACGCCACCATTACTGCTTCTAGAGCTCACTCAGTTCCTCCAACTGACACTAACGATCACC CTAACCTCTCCCATTCCTCTTCGAATTTCAACACCTCCTCCTCCACCACATTCGCCTCTCCCTCGCGTCGGAGCTCCGGCGCCTTCTCCCGAACTATCTC CGTTCCTCAACCTGTTTTTCCTAACTGGACGCCCTCCGACCGCGTCCTTCGCTTCAATCCCGATCAGATTGCAGAAATTCGGTCTCGGCTTAATATAGAT GTTAGTGTTGCTTCGGGTTCACCTCTTGCACCTGCAGCTATTGAATCATTTGAAGATATGTGTTTACATCAAAGTATCATGAAGGATATTGCACATCATG AGTATACGAGGCCGACTTCAATCCAGGCTCAGGCAATGACTGTTGCACTTAGTGGAAGGGATTTGCTGGGTTGTGCTGAAACTGGTAGTGGCAAAACTGC CGCATTTACCATTCCTATGATACAGCATTGCTTGGCTCAACCTACTGTTCGGCGTGGTGATGGACCATTGGCATTGGTGCTGGCTCCTACAAGAGAACTC GCTCAGCAGATTGAAAAAGAGGTTAAAGGTTTTAGTAGATCTCTTGAGTCCTTTAGAACGGCAATCGTGGTGGGAGGAACAAATATTGCTGACCAGAGGT TGGAGCTACGAGCAGGAGTGGATGTAATTGTTGCTACTCCTGGAAGATTAATCGATCATTTACAACAAGGAAACACTTCCCTTTCAAGAATTTCATTTAT CGTTCTGGATGAAGCTGATAGAATGCTTGACATGGGGTTTGAACCACAGATTAGAGAGGTTATGCGCAACCTTCCAGAAAAGCATCAAACTTTGCTGTTC AGTGCAACTATGCCTGTGGAAATTGAAACATTAACACAGGAGTACTTAACTAGCCCTGTGCAAGTTAGGGTAGGAAAAGTGAGTAGCCCAACTGCAAATG TGTCTCAAATTCTGACAAAGGTTTCTGAAAGCGAGAAGATTGATTGCCTTCTAGCTCTGCTCGTGGAGGATGCTTCTCAGGCTGAAAGATCAAATCAACC TTTCCCCTTGACTATTGTGTTTGTGGAGAGGAAGACAAGGTGCAACGAAGTTGCTGAAGCTTTGGTAGCACAAGCTTTACAGGCAGTTGCTCTTCATGGT GGTCGTAGTCAGAGTGATAGAGAGGCTGCTCTGCGTGATTTTAGGAGTGGCTCTACTAGTATTTTGGTTGCCACTGATGTTGCATCTCGCGGATTGGATG TAACTGGAGTTGCTCATGTGATTAATCTGGATCTCCCAAAGACAATGGAAGATTATGTGCATCGAATTGGAAGGACTGGCCGTGCAGGATCAACTGGCCA AGCCACTTCATTTTACACTGATCAAGATCTGTTCCTCGTGGCACAAATAAAGAAAGCAATAGCAGATGTTGAGTCGGGGAACACGGTGGCTTTTGCAACA GGGAAGACTGCGAGAAGGAAAGAGAGAGAGGCAGCGGCGGCTTTGCATAAGGAAGCCAGGAATGATCCGTCCAAGGTGACGGGGCCCGCGTGTATAAACA TCGAGGATAAGTATAGGTTCATGATGGCTCCTTCAATCATTAAAAGTGAGGGTGCAGCTGACAGTGCTTGGGATGATTGA
AA sequence Show only first row Show all	>Potri.013G158000.1 pacid=42811130 polypeptide=Potri.013G158000.1.p locus=Potri.013G158000 ID=Potri.013G158000.1.v4.1 annot-version=v4.1 MSYIPPHLRNSSSNATITASRAHSVPPTDTNDHPNLSHSSSNFNTSSSTTFASPSRRSSGAFSRTISVPQPVFPNWTPSDRVLRFNPDQIAEIRSRLNID VSVASGSPLAPAAIESFEDMCLHQSIMKDIAHHEYTRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPTVRRGDGPLALVLAPTREL AQQIEKEVKGFSRSLESFRTAIVVGGTNIADQRLELRAGVDVIVATPGRLIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLF SATMPVEIETLTQEYLTSPVQVRVGKVSSPTANVSQILTKVSESEKIDCLLALLVEDASQAERSNQPFPLTIVFVERKTRCNEVAEALVAQALQAVALHG GRSQSDREAALRDFRSGSTSILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDQDLFLVAQIKKAIADVESGNTVAFAT GKTARRKEREAAAALHKEARNDPSKVTGPACINIEDKYRFMMAPSIIKSEGAADSAWDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55150			DEA(D/H)-box RNA helicase fami...		Potri.013G158000 [exp]	0	1	Pt-P68.2
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G029100 [exp]	14.00	0.7277
AT1G63770			Peptidase M1 family protein (....		Potri.003G129500 [exp]	17.74	0.6873
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	21.44	0.6923
AT2G01720			Ribophorin I (.1)		Potri.008G038700 [exp]	26.45	0.7259
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	26.49	0.6884
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Potri.018G033700 [exp]	29.52	0.6226
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.017G110400 [exp]	33.58	0.7238
AT2G27775			unknown protein		Potri.009G148400 [exp]	40.62	0.6910
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	46.09	0.6859
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Potri.014G165400 [exp]	69.28	0.6671	Pt-ATVPS11.1

Compare expression of checked genes

Potri.013G158000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.