Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT5G58320 369 / 1e-120 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) AT4G14760 147 / 1e-36 kinase interacting (KIP1-like) family protein (.1) AT1G03080 146 / 3e-36 kinase interacting (KIP1-like) family protein (.1) AT4G02710 141 / 1e-34 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 140 / 3e-34 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 126 / 5e-30 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 125 / 1e-29 Kinase interacting (KIP1-like) family protein (.1) AT1G09720 119 / 7e-28 Kinase interacting (KIP1-like) family protein (.1) AT2G47920 99 / 3e-23 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131000 [exp] 926 / 0 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.019G061600 [exp] 320 / 1e-101 AT5G58320 180 / 8e-50 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Potri.010G083300 [exp] 152 / 3e-38 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 149 / 3e-37 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 145 / 6e-37 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 146 / 2e-36 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 125 / 1e-29 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.005G147300 [exp] 122 / 8e-29 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.007G011300 [exp] 122 / 1e-28 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019111 [exp] 506 / 5e-174 AT5G58320 347 / 3e-113 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10034448 [exp] 503 / 4e-173 AT5G58320 350 / 2e-114 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2), Kinase interacting (KIP1-like) family protein (.3) Lus10029012 [exp] 174 / 9e-48 AT5G05180 146 / 5e-39 unknown protein Lus10034251 [exp] 162 / 1e-43 AT5G05180 149 / 4e-40 unknown protein Lus10014687 [exp] 155 / 3e-39 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 155 / 4e-39 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 149 / 2e-37 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 145 / 9e-36 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10041192 [exp] 137 / 3e-33 AT4G14760 744 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10030507 [exp] 122 / 8e-30 AT5G05180 120 / 3e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.013G158100.1 pacid=42812076 polypeptide=Potri.013G158100.1.p locus=Potri.013G158100 ID=Potri.013G158100.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTATGGTTCCGTCTAAGAATTTTAAGAGATCGCAATCAAGAAAATCGCATTCGTGGTGGTGGGATAGTCATATCAGTCCGAAAAATTCCA AGTGGCTTATTGATAATCTTGAGGAGATGGACCAGAACGTTAAGCGGATGCTGAAGCTAATTGAAGATGATGGAGATTCATTTGTTAAAAAGGCTGAGAT GTATTATCAGAAGAGACCAGAACTAATTTCTCATGTAGAGGAGTTCTACCGCATGTATCGATCTCTGGCTGAACGTTATGATCACGTGACAGGAGAATTA AGGAGGAGTATTCCATCAGATCTTCAATCCCAGGGCTCCGGAATTTCTGATGCTGTCTCCGAACCACCTTCTCCTGCGCGTGAACAAAAACTAAGCCGTC ATAAATCTGGCCCTCGAGCTGCTGGGTTTGAAGTCTTTCTGGGTTCCGGTGGTAGCAGCGATCATCACCAGAAAGAAGGAGATGAATCATCCACTTTGAC AGATTCAGAATCAGAATCTGATGATTCTTCAGTCAACAATTACTCAAGTCTATCAGGGAATAGTGGTGACCAAGGACTGTCCAGGAAGATAATTGATTTA GAAATTGAGCTTCGCGAAACAAAAGAGAAGCTGCGGGCGCAGCAAGATGAGAGTGTTGATGGCTCATTTAGGGGAGTGAGAAATGAGGATTTTGATGATA TTCTTGCTAGAATTGCAGGGTATGAGCGAGATCTGAAAAATGCAAATCAGAGAATACAGGTGTCAGAAGAAGAGGTTGCTAGATTGAACATTGAGCTTAA AAAATATAGGTCATCTGAGGTCACTGAAGGTTTGCAGTCTGAGTTTGCATCGTCCACTGAGAGCAAGGCGATGACAAGGGAGGCTGAGCTGGAACCTGAG ATAAATCAAGCTTCACATCTTCAAGAAAGGATTGATGGGTCAGAATCTGATACTTTTGACTCCAATGCTAAGATTCAGTCGCTAATGAAAGAACTTAGGA TTGCTAATGAGAGACTTAAGGTTTCAGAGAAAGAAATTACTACTTTGAAAGGGCAACTTGAGGGTGATGGACCCTCTGATAAAATCAATAATTTGCAGGA TGAGCTTGCATTGGCTCACAAGGAGATAAATACGTTGAAAAAAAAGCTCAACGCGGAAAAAAGGGAGGTCTCCAAGCTGCAAGAAAGAATTTCCAGGTTG AAAAGTAGTCTCTCAGACCGGGATCATGAGGCGAGAGATCTTAAAATAGCAGTCTCTGATGCTGAGCAGAAGATTTTTCCAGAAAAAGCACAGATTAAGG CTGAAATGTCTAAACTGATAGAGGAGAGGACATGCTTGGAGGAGCAGCTGAAAGAGCAAGAATCACGTGGCCGTTCTTTAGAGGATGACATTAGGATGTT CCAGGCTGAAAAAGCAGAAATGGAGCAAAGACTTGATTGTGAGATTCAGCAGTTAAAGGAAGACATTGCTGAGAGAGACAATCACATAGAAAAAATGGAT AAAAGCCTTGATGTTTTAAAATCTGAGAGAGATGAGCTTAATGTTAAAGTTATTGCTCTTAAAGCAGAGGTAACTTCAAGAGATGAACGGATTGATCAAA TGGATAGGCATTTGCAACAGTTACACATGGAGCATGTGAAGCTGGTTTCCGGTGCTGAAGAGGCACGAAAACTAATGGATGTGTTAAGATCAAAAGTTAA GGATCTGGAGGAAGAAGTTGAGAGGCAAAGATTTGTAATCCTGGAAGGGGCAGAAGAGAAACGGGAGGCTATAAGGCAACTGTGTCTCGCACTTGAACAT TACAGGAATGATTATCATACGCTAAGACAAGCTTTTGTCGGGCATAAGAGAGTTCCAGTCTTGGCAACATAA
AA sequence Show only first row Show all	>Potri.013G158100.1 pacid=42812076 polypeptide=Potri.013G158100.1.p locus=Potri.013G158100 ID=Potri.013G158100.1.v4.1 annot-version=v4.1 MASSMVPSKNFKRSQSRKSHSWWWDSHISPKNSKWLIDNLEEMDQNVKRMLKLIEDDGDSFVKKAEMYYQKRPELISHVEEFYRMYRSLAERYDHVTGEL RRSIPSDLQSQGSGISDAVSEPPSPAREQKLSRHKSGPRAAGFEVFLGSGGSSDHHQKEGDESSTLTDSESESDDSSVNNYSSLSGNSGDQGLSRKIIDL EIELRETKEKLRAQQDESVDGSFRGVRNEDFDDILARIAGYERDLKNANQRIQVSEEEVARLNIELKKYRSSEVTEGLQSEFASSTESKAMTREAELEPE INQASHLQERIDGSESDTFDSNAKIQSLMKELRIANERLKVSEKEITTLKGQLEGDGPSDKINNLQDELALAHKEINTLKKKLNAEKREVSKLQERISRL KSSLSDRDHEARDLKIAVSDAEQKIFPEKAQIKAEMSKLIEERTCLEEQLKEQESRGRSLEDDIRMFQAEKAEMEQRLDCEIQQLKEDIAERDNHIEKMD KSLDVLKSERDELNVKVIALKAEVTSRDERIDQMDRHLQQLHMEHVKLVSGAEEARKLMDVLRSKVKDLEEEVERQRFVILEGAEEKREAIRQLCLALEH YRNDYHTLRQAFVGHKRVPVLAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30500			Kinase interacting (KIP1-like)...		Potri.013G158100 [exp]	0	1
AT1G15290			Tetratricopeptide repeat (TPR)...		Potri.003G031000 [exp]	7.81	0.7018
AT3G13180			NOL1/NOP2/sun family protein /...		Potri.001G368500 [exp]	11.83	0.6809
AT1G55930			CBS domain-containing protein ...		Potri.001G362100 [exp]	28.19	0.6221
AT4G20800			FAD-binding Berberine family p...		Potri.001G459500 [exp]	32.03	0.6392
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	91.73	0.5563	RGA.58
					Potri.016G130201 [exp]	102.85	0.5571
AT5G06440			unknown protein		Potri.016G067000 [exp]	113.29	0.5734
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G140800 [exp]	118.84	0.5617
					Potri.004G164034 [exp]	139.40	0.5415
AT3G03010			Peptidyl-tRNA hydrolase II (PT...		Potri.013G082850 [exp]	196.31	0.5510

Compare expression of checked genes

Potri.013G158100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.